Rh1CG083700
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
17501161 .. 17501718
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG083700.1

Sequence Viewer

Length: 558 bp
ATGGCACCCCACTCCATTTTCAGCAAGAGCCTCAGATTTTCTCTACTGTTTTGTAGAAATCGACACCCAATGGAGGGATTTGCTTCACATTTGGGTAGAAGACTCATCAGCAACACCGAAATCCCAGCCGGCCAAGACGATTCTACGGTCTCCTTCCTGGTTAACTCATGTGGGCTTTCCCAAGAAGCCGCCATTGTAGCATCCCACAAGGTAAAGCTTCGATCTTTGGTGAAATCAGACTCCGTTTTAGCGCTTTTGAAACACTATGAATTATCAGATGCCCATATCTCAAAGGTTGTGCGGATGCACCCACGTGTTCTGGTGGCAAATGCCCAGGAAACCCTTTTGCCAAAGCTCGAGTTTTTGTGCTCCATGGGAATGTCGAGGCTCGACCTTGCAAAAACACTGACCTACAACCCAATTGTTTTGACTCGAAGCTTGAAAAACTGCATTATATCCTGTTATACCTTCCTCAAAGAAATGGTATTAGAAGGCCTGAATTCTTCACTCAACTTGCGGGTGAGGTCAAAGAAATGGGATTTGACCATCAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

9.74

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 83 - 164 2.1e-11 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 3 cut(s) 189, 301, 517
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 499
AcvI CACGTG 1 cut(s) 314
AfeI AGCGCT 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 73, 74
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 2 cut(s) 259, 442
AjnI CCWGG 2 cut(s) 156, 333
AleI CACNNNNGTG 1 cut(s) 312
AluBI AGCT 3 cut(s) 217, 355, 438
AluI AGCT 3 cut(s) 217, 355, 438
Alw21I GWGCWC 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 356
Aor51HI AGCGCT 1 cut(s) 252
AoxI GGCC 2 cut(s) 130, 493
ApoI RAATTY 1 cut(s) 499
AspLEI GCGC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 241, 532
AvaI CYCGRG 1 cut(s) 356
BanI GGYRCC 1 cut(s) 4
BbrPI CACGTG 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 371
BccI CCATC 1 cut(s) 554
BciT130I CCWGG 2 cut(s) 158, 335
BcoDI GTCTC 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 2 cut(s) 158, 335
BmeT110I CYCGRG 1 cut(s) 356
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 158, 335
BmsI GCATC 3 cut(s) 209, 268, 294
BpiI GAAGAC 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 333, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 74
Bse118I RCCGGY 1 cut(s) 128
BseBI CCWGG 2 cut(s) 158, 335
BseDI CCNNGG 2 cut(s) 333, 372
BseGI GGATG 2 cut(s) 200, 309
BseLI CCNNNNNNNGG 2 cut(s) 73, 74
BseMII CTCAG 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 124
BshFI GGCC 2 cut(s) 132, 495
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 356
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 2 cut(s) 73, 74
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 132, 495
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 371
Bsp143I GATC 1 cut(s) 221
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 3 cut(s) 189, 301, 517
BspANI GGCC 2 cut(s) 132, 495
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 333, 372
BssMI GATC 1 cut(s) 221
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 158, 335
Bst4CI ACNGT 2 cut(s) 48, 148
BstBAI YACGTR 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 200, 309
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 158, 335
BstSCI CCNGG 2 cut(s) 156, 333
BstV2I GAAGAC 1 cut(s) 106
BsuRI GGCC 2 cut(s) 132, 495
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 200, 309
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 253
Cfr10I RCCGGY 1 cut(s) 128
CviAII CATG 2 cut(s) 168, 373
DdeI CTNAG 1 cut(s) 32
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 372
Eco147I AGGCCT 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 154
Eco47III AGCGCT 1 cut(s) 252
Eco72I CACGTG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 2 cut(s) 156, 333
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 2 cut(s) 171, 376
FaiI YATR 6 cut(s) 169, 267, 285, 374, 455, 465
FatI CATG 2 cut(s) 167, 372
FauI CCCGC 1 cut(s) 510
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 2 cut(s) 187, 316
Fsp4HI GCNGC 1 cut(s) 189
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 2 cut(s) 132, 495
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 253
Hin1II CATG 2 cut(s) 171, 376
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 2 cut(s) 215, 436
HinfI GANTC 4 cut(s) 102, 140, 239, 430
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 241, 532
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 35, 238, 277
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 3 cut(s) 163, 478, 485
HpyCH4III ACNGT 2 cut(s) 48, 148
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 307, 398, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 313
Hsp92II CATG 2 cut(s) 171, 376
HspAI GCGC 1 cut(s) 251
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 1 cut(s) 374
LpnPI CCDG 9 cut(s) 138, 142, 143, 170, 305, 320, 347, 472, 509
LweI GCATC 3 cut(s) 209, 268, 294
MaeII ACGT 1 cut(s) 313
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 2 cut(s) 111, 495
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 371
MluCI AATT 3 cut(s) 269, 420, 499
MlyI GAGTC 3 cut(s) 96, 233, 424
MnlI CCTC 5 cut(s) 41, 67, 378, 482, 516
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 1 cut(s) 162
MslI CAYNNNNRTG 3 cut(s) 312, 377, 551
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 158, 335
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 2 cut(s) 158, 335
MwoI GCNNNNNNNGC 1 cut(s) 197
NaeI GCCGGC 1 cut(s) 130
NcoI CCATGG 1 cut(s) 372
NdeII GATC 1 cut(s) 221
NgoMIV GCCGGC 1 cut(s) 128
NlaIII CATG 2 cut(s) 171, 376
NlaIV GGNNCC 1 cut(s) 6
OliI CACNNNNGTG 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 356
PceI AGGCCT 1 cut(s) 495
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 3 cut(s) 96, 233, 424
PmaCI CACGTG 1 cut(s) 314
PmlI CACGTG 1 cut(s) 314
PpsI GAGTC 3 cut(s) 96, 233, 424
Ppu21I YACGTR 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 156, 333
PspCI CACGTG 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 2 cut(s) 156, 333
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 356
RseI CAYNNNNRTG 3 cut(s) 312, 377, 551
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 221
SchI GAGTC 3 cut(s) 96, 233, 424
ScrFI CCNGG 2 cut(s) 158, 335
SduI GDGCHC 1 cut(s) 371
SfaNI GCATC 3 cut(s) 209, 268, 294
Sfr274I CTCGAG 1 cut(s) 356
SlaI CTCGAG 1 cut(s) 356
SmiMI CAYNNNNRTG 3 cut(s) 312, 377, 551
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 3 cut(s) 269, 420, 499
SseBI AGGCCT 1 cut(s) 495
SsiI CCGC 3 cut(s) 189, 301, 517
StuI AGGCCT 1 cut(s) 495
StyD4I CCNGG 2 cut(s) 156, 333
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 48, 148
TaiI ACGT 1 cut(s) 316
TaqI TCGA 6 cut(s) 61, 220, 357, 383, 390, 433
TasI AATT 3 cut(s) 269, 420, 499
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 411
TspDTI ATGAA 1 cut(s) 282
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 411
XapI RAATTY 1 cut(s) 499
XhoI CTCGAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.