Prupe.7G248200_v2.0.a1

Calmodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000115
Physical Location & Seq
Reverse (-)
21063801 .. 21064493
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G248200.1

Sequence Viewer

Length: 693 bp
ATGGTGTTAATCACCATACTGTTGTTAGCAGTTCTATTCATTGCTGGCCTCATTAACATAGTCTTTTATTTGCCCACCAACAAGTTCCTTGCATGGTTTCAATCTCTGTTCCAAGCCAACTCATCCACTGCTGCAACTCCAGTGGCTCCACCTACCAAAAGCAAAGATATTATTAGCAGCAACAGAGCGGAGGATGCAGAGCTCAAGCAAGTATTTGCCACCTTCGACAAGAACAGTGATGGCTTTATCACAAAGCAAGAGCTCAAGGAGTCGTTGAAGAACATCAGAATCTTCATGAGCGATGCAGAGGTGGAAGAAATGGTGAAGAAAGTGGATGCTAATGGAGATGGGTTGATTGAATTTGATGAGTTCCGCATGCTGTGCGAGTCAATGCACCGTCGAGATCAGGGAGTGGGCGGCGAAGATGGGAACGGGTTAAGCAGAGAGGAGGAGGCAGAGGAGGAACTGAAGGAAGCCTTTGATGTGTTTGATAAGGATAAAGATGGGCTGATTTCAGTGGAGGAGTTGGGGGTGGTGTTGTGTTCTTTGGGTTTGAGAGAGGGAAATAAGGTGGAGGATTGCAAGGAGATGGTTAAGAAGGTTGACAGGGATGGGGATGGTATGGTTAATTTTGATGAGTTCAAGAGGATGATGAAAGGTGGAGCTGGAGGAAGACTTCTACTAGCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5

Protein Analysis

231

Amino Acids

25.61

Weight (kDa)

4.7

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AciI CCGC 3 cut(s) 188, 373, 417
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 1 cut(s) 488
AgsI TTSAA 4 cut(s) 101, 277, 359, 643
AluBI AGCT 3 cut(s) 202, 262, 665
AluI AGCT 3 cut(s) 202, 262, 665
Alw21I GWGCWC 2 cut(s) 204, 264
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 131, 177
ApoI RAATTY 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 4, 334
BanII GRGCYC 2 cut(s) 204, 264
BbsI GAAGAC 1 cut(s) 679
Bbv12I GWGCWC 2 cut(s) 204, 264
BbvI GCAGC 2 cut(s) 118, 189
BccI CCATC 7 cut(s) 233, 341, 419, 497, 583, 605, 611
BfaI CTAG 1 cut(s) 683
BisI GCNGC 3 cut(s) 132, 178, 418
BlsI GCNGC 3 cut(s) 133, 179, 419
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 3 cut(s) 184, 292, 325
BpiI GAAGAC 1 cut(s) 679
BpmI CTGGAG 2 cut(s) 123, 687
BpuEI CTTGAG 2 cut(s) 188, 248
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 6 cut(s) 122, 199, 340, 616, 622, 654
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 4 cut(s) 461, 464, 473, 536
BseXI GCAGC 2 cut(s) 118, 189
BshFI GGCC 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 204, 264
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 204, 264
Bsp143I GATC 1 cut(s) 403
BspACI CCGC 3 cut(s) 188, 373, 417
BspANI GGCC 1 cut(s) 48
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 140
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 3 cut(s) 21, 236, 398
BstAPI GCANNNNNTGC 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 46, 377
BstF5I GGATG 6 cut(s) 122, 199, 340, 616, 622, 654
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 2 cut(s) 194, 381
BstNSI RCATGY 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 118, 189
BstV2I GAAGAC 1 cut(s) 679
BsuRI GGCC 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 6 cut(s) 122, 199, 340, 616, 622, 654
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 4 cut(s) 126, 147, 241, 522
Cac8I GCNNGC 2 cut(s) 46, 377
CciI TCATGA 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 3 cut(s) 93, 295, 376
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Ecl136II GAGCTC 2 cut(s) 202, 262
Eco24I GRGCYC 2 cut(s) 204, 264
Eco53kI GAGCTC 2 cut(s) 202, 262
Eco57I CTGAAG 1 cut(s) 488
EcoICRI GAGCTC 2 cut(s) 202, 262
EcoT38I GRGCYC 2 cut(s) 204, 264
FaeI CATG 3 cut(s) 96, 298, 379
FaiI YATR 6 cut(s) 17, 59, 94, 296, 377, 623
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FatI CATG 3 cut(s) 92, 294, 375
Fnu4HI GCNGC 3 cut(s) 132, 178, 418
FokI GGATG 6 cut(s) 109, 206, 347, 623, 629, 661
FriOI GRGCYC 2 cut(s) 204, 264
Fsp4HI GCNGC 3 cut(s) 132, 178, 418
FspBI CTAG 1 cut(s) 683
GluI GCNGC 3 cut(s) 132, 178, 418
GsuI CTGGAG 2 cut(s) 123, 687
HaeIII GGCC 1 cut(s) 48
Hin1II CATG 3 cut(s) 96, 298, 379
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HinfI GANTC 3 cut(s) 269, 288, 386
HphI GGTGA 2 cut(s) 4, 334
Hpy166II GTNNAC 1 cut(s) 604
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 3 cut(s) 295, 401, 643
Hpy8I GTNNAC 1 cut(s) 604
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 3 cut(s) 232, 463, 592
HpyCH4III ACNGT 3 cut(s) 21, 236, 398
HpyCH4V TGCA 6 cut(s) 92, 134, 197, 305, 394, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 381
Hsp92II CATG 3 cut(s) 96, 298, 379
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 151, 662
LpnPI CCDG 5 cut(s) 30, 153, 392, 592, 651
Lsp1109I GCAGC 2 cut(s) 118, 189
LweI GCATC 3 cut(s) 184, 292, 325
MaeI CTAG 1 cut(s) 683
MalI GATC 1 cut(s) 405
MbiI CCGCTC 1 cut(s) 188
MboI GATC 1 cut(s) 403
MboII GAAGA 6 cut(s) 283, 289, 326, 337, 434, 684
MhlI GDGCHC 2 cut(s) 204, 264
MluCI AATT 2 cut(s) 359, 628
MlyI GAGTC 2 cut(s) 278, 395
MseI TTAA 6 cut(s) 8, 54, 437, 594, 627, 691
MwoI GCNNNNNNNGC 2 cut(s) 194, 381
NdeII GATC 1 cut(s) 403
NlaIII CATG 3 cut(s) 96, 298, 379
NlaIV GGNNCC 1 cut(s) 147
NspI RCATGY 1 cut(s) 379
PaeI GCATGC 1 cut(s) 379
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 288
PkrI GCNGC 3 cut(s) 133, 179, 419
PleI GAGTC 2 cut(s) 277, 394
PpsI GAGTC 2 cut(s) 277, 394
Psp124BI GAGCTC 2 cut(s) 204, 264
PspN4I GGNNCC 1 cut(s) 147
SacI GAGCTC 2 cut(s) 204, 264
SaqAI TTAA 6 cut(s) 8, 54, 437, 594, 627, 691
SatI GCNGC 3 cut(s) 132, 178, 418
Sau3AI GATC 1 cut(s) 403
SchI GAGTC 2 cut(s) 278, 395
SduI GDGCHC 2 cut(s) 204, 264
SetI ASST 9 cut(s) 154, 204, 224, 264, 312, 573, 603, 661, 667
SfaNI GCATC 3 cut(s) 184, 292, 325
SmlI CTYRAG 2 cut(s) 203, 263
SmoI CTYRAG 2 cut(s) 203, 263
SphI GCATGC 1 cut(s) 379
Sse9I AATT 2 cut(s) 359, 628
SsiI CCGC 3 cut(s) 188, 373, 417
SspMI CTAG 1 cut(s) 683
SstI GAGCTC 2 cut(s) 204, 264
TaaI ACNGT 3 cut(s) 21, 236, 398
TaqI TCGA 2 cut(s) 225, 400
TasI AATT 2 cut(s) 359, 628
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 6 cut(s) 8, 54, 437, 594, 627, 691
Tru9I TTAA 6 cut(s) 8, 54, 437, 594, 627, 691
TscAI CASTG 4 cut(s) 133, 147, 241, 522
TseI GCWGC 2 cut(s) 131, 177
TspDTI ATGAA 3 cut(s) 28, 283, 668
TspRI CASTG 4 cut(s) 133, 147, 241, 522
XapI RAATTY 1 cut(s) 359
XceI RCATGY 1 cut(s) 379
XspI CTAG 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.