mTERF
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 276 |
| AciI | CCGC | 1 cut(s) | 216 |
| AcoI | YGGCCR | 1 cut(s) | 475 |
| AcsI | RAATTY | 2 cut(s) | 320, 381 |
| AcuI | CTGAAG | 1 cut(s) | 27 |
| AfaI | GTAC | 5 cut(s) | 93, 113, 524, 564, 584 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 255 |
| AgsI | TTSAA | 2 cut(s) | 19, 106 |
| AjiI | CACGTC | 1 cut(s) | 236 |
| AjnI | CCWGG | 1 cut(s) | 299 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 512, 544 |
| Alw26I | GTCTC | 1 cut(s) | 508 |
| AoxI | GGCC | 2 cut(s) | 407, 475 |
| ApeKI | GCWGC | 3 cut(s) | 166, 293, 296 |
| ApoI | RAATTY | 2 cut(s) | 320, 381 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 486, 518 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 53, 524 |
| AspLEI | GCGC | 1 cut(s) | 191 |
| AspS9I | GGNCC | 2 cut(s) | 206, 407 |
| AvaII | GGWCC | 1 cut(s) | 206 |
| BalI | TGGCCA | 1 cut(s) | 477 |
| BanII | GRGCYC | 1 cut(s) | 434 |
| BbvI | GCAGC | 3 cut(s) | 153, 280, 308 |
| BccI | CCATC | 1 cut(s) | 486 |
| BciT130I | CCWGG | 1 cut(s) | 301 |
| BcoDI | GTCTC | 1 cut(s) | 508 |
| BfaI | CTAG | 1 cut(s) | 267 |
| BfmI | CTRYAG | 1 cut(s) | 294 |
| BfoI | RGCGCY | 1 cut(s) | 192 |
| BisI | GCNGC | 4 cut(s) | 167, 216, 294, 297 |
| BlsI | GCNGC | 4 cut(s) | 168, 217, 295, 298 |
| BmcAI | AGTACT | 1 cut(s) | 524 |
| Bme1390I | CCNGG | 1 cut(s) | 301 |
| Bme18I | GGWCC | 1 cut(s) | 206 |
| BmgBI | CACGTC | 1 cut(s) | 236 |
| BmgT120I | GGNCC | 2 cut(s) | 206, 407 |
| BmiI | GGNNCC | 1 cut(s) | 208 |
| BmrFI | CCNGG | 1 cut(s) | 301 |
| BsaJI | CCNNGG | 2 cut(s) | 115, 586 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 255 |
| Bse118I | RCCGGY | 1 cut(s) | 218 |
| BseBI | CCWGG | 1 cut(s) | 301 |
| BseDI | CCNNGG | 2 cut(s) | 115, 586 |
| BseGI | GGATG | 1 cut(s) | 583 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 255 |
| BseMII | CTCAG | 3 cut(s) | 161, 167, 568 |
| BseRI | GAGGAG | 1 cut(s) | 437 |
| BseXI | GCAGC | 3 cut(s) | 153, 280, 308 |
| BshFI | GGCC | 2 cut(s) | 409, 477 |
| BsiSI | CCGG | 1 cut(s) | 219 |
| BslFI | GGGAC | 1 cut(s) | 192 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 255 |
| BsmAI | GTCTC | 1 cut(s) | 508 |
| BsmFI | GGGAC | 1 cut(s) | 192 |
| BsnI | GGCC | 2 cut(s) | 409, 477 |
| Bsp1286I | GDGCHC | 1 cut(s) | 434 |
| BspACI | CCGC | 1 cut(s) | 216 |
| BspANI | GGCC | 2 cut(s) | 409, 477 |
| BspCNI | CTCAG | 3 cut(s) | 162, 168, 567 |
| BspLI | GGNNCC | 1 cut(s) | 208 |
| BspMAI | CTGCAG | 1 cut(s) | 298 |
| BsrFI | RCCGGY | 1 cut(s) | 218 |
| BssAI | RCCGGY | 1 cut(s) | 218 |
| BssECI | CCNNGG | 2 cut(s) | 115, 586 |
| BssT1I | CCWWGG | 1 cut(s) | 115 |
| Bst2UI | CCWGG | 1 cut(s) | 301 |
| Bst4CI | ACNGT | 3 cut(s) | 153, 511, 587 |
| Bst6I | CTCTTC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 5 cut(s) | 63, 170, 176, 334, 554 |
| BstDSI | CCRYGG | 1 cut(s) | 586 |
| BstF5I | GGATG | 1 cut(s) | 583 |
| BstH2I | RGCGCY | 1 cut(s) | 192 |
| BstHHI | GCGC | 1 cut(s) | 191 |
| BstMAI | GTCTC | 1 cut(s) | 508 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 166 |
| BstNI | CCWGG | 1 cut(s) | 301 |
| BstSCI | CCNGG | 1 cut(s) | 299 |
| BstSFI | CTRYAG | 1 cut(s) | 294 |
| BstV1I | GCAGC | 3 cut(s) | 153, 280, 308 |
| BsuRI | GGCC | 2 cut(s) | 409, 477 |
| BtgI | CCRYGG | 1 cut(s) | 586 |
| BtrI | CACGTC | 1 cut(s) | 236 |
| BtsCI | GGATG | 1 cut(s) | 583 |
| BtsIMutI | CAGTG | 1 cut(s) | 507 |
| CfoI | GCGC | 1 cut(s) | 191 |
| Cfr10I | RCCGGY | 1 cut(s) | 218 |
| Cfr13I | GGNCC | 2 cut(s) | 206, 407 |
| Csp6I | GTAC | 5 cut(s) | 92, 112, 523, 563, 583 |
| CviAII | CATG | 2 cut(s) | 373, 404 |
| CviJI | RGCY | 6 cut(s) | 215, 293, 299, 409, 432, 477 |
| CviKI_1 | RGCY | 6 cut(s) | 215, 293, 299, 409, 432, 477 |
| CviQI | GTAC | 5 cut(s) | 92, 112, 523, 563, 583 |
| DdeI | CTNAG | 5 cut(s) | 63, 170, 176, 334, 554 |
| EaeI | YGGCCR | 1 cut(s) | 475 |
| Eam1104I | CTCTTC | 1 cut(s) | 6 |
| EarI | CTCTTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 115 |
| Eco24I | GRGCYC | 1 cut(s) | 434 |
| Eco32I | GATATC | 2 cut(s) | 80, 601 |
| Eco47I | GGWCC | 1 cut(s) | 206 |
| Eco57I | CTGAAG | 1 cut(s) | 27 |
| EcoRII | CCWGG | 1 cut(s) | 299 |
| EcoRV | GATATC | 2 cut(s) | 80, 601 |
| EcoT14I | CCWWGG | 1 cut(s) | 115 |
| EcoT38I | GRGCYC | 1 cut(s) | 434 |
| ErhI | CCWWGG | 1 cut(s) | 115 |
| FaeI | CATG | 2 cut(s) | 376, 407 |
| FaiI | YATR | 6 cut(s) | 23, 315, 361, 363, 374, 405 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 512, 544 |
| FaqI | GGGAC | 1 cut(s) | 192 |
| FatI | CATG | 2 cut(s) | 372, 403 |
| FblI | GTMKAC | 1 cut(s) | 276 |
| Fnu4HI | GCNGC | 4 cut(s) | 167, 216, 294, 297 |
| FokI | GGATG | 1 cut(s) | 590 |
| FriOI | GRGCYC | 1 cut(s) | 434 |
| Fsp4HI | GCNGC | 4 cut(s) | 167, 216, 294, 297 |
| FspBI | CTAG | 1 cut(s) | 267 |
| GlaI | GCGC | 1 cut(s) | 190 |
| GluI | GCNGC | 4 cut(s) | 167, 216, 294, 297 |
| HaeII | RGCGCY | 1 cut(s) | 192 |
| HaeIII | GGCC | 2 cut(s) | 409, 477 |
| HapII | CCGG | 1 cut(s) | 219 |
| HhaI | GCGC | 1 cut(s) | 191 |
| Hin1II | CATG | 2 cut(s) | 376, 407 |
| Hin6I | GCGC | 1 cut(s) | 189 |
| HinP1I | GCGC | 1 cut(s) | 189 |
| HincII | GTYRAC | 1 cut(s) | 277 |
| HindII | GTYRAC | 1 cut(s) | 277 |
| HinfI | GANTC | 1 cut(s) | 172 |
| HpaII | CCGG | 1 cut(s) | 219 |
| Hpy166II | GTNNAC | 4 cut(s) | 112, 277, 544, 583 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 177, 250, 517 |
| Hpy188III | TCNNGA | 3 cut(s) | 58, 134, 604 |
| Hpy8I | GTNNAC | 4 cut(s) | 112, 277, 544, 583 |
| Hpy99I | CGWCG | 2 cut(s) | 237, 281 |
| HpyAV | CCTTC | 5 cut(s) | 179, 283, 340, 389, 447 |
| HpyCH4III | ACNGT | 3 cut(s) | 153, 511, 587 |
| HpyCH4IV | ACGT | 1 cut(s) | 235 |
| HpyCH4V | TGCA | 1 cut(s) | 296 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 166 |
| HpyF3I | CTNAG | 5 cut(s) | 63, 170, 176, 334, 554 |
| HpySE526I | ACGT | 1 cut(s) | 235 |
| Hsp92II | CATG | 2 cut(s) | 376, 407 |
| HspAI | GCGC | 1 cut(s) | 189 |
| LmnI | GCTCC | 1 cut(s) | 424 |
| LpnPI | CCDG | 7 cut(s) | 119, 177, 232, 286, 313, 483, 532 |
| Lsp1109I | GCAGC | 3 cut(s) | 153, 280, 308 |
| MaeI | CTAG | 1 cut(s) | 267 |
| MaeII | ACGT | 1 cut(s) | 235 |
| MboII | GAAGA | 2 cut(s) | 23, 263 |
| MfeI | CAATTG | 2 cut(s) | 98, 569 |
| MhlI | GDGCHC | 1 cut(s) | 434 |
| MlsI | TGGCCA | 1 cut(s) | 477 |
| MluCI | AATT | 7 cut(s) | 98, 320, 381, 437, 443, 464, 569 |
| MluNI | TGGCCA | 1 cut(s) | 477 |
| MlyI | GAGTC | 1 cut(s) | 181 |
| MmeI | TCCRAC | 2 cut(s) | 495, 555 |
| MnlI | CCTC | 4 cut(s) | 105, 415, 423, 576 |
| Mox20I | TGGCCA | 1 cut(s) | 477 |
| MroXI | GAANNNNTTC | 2 cut(s) | 53, 524 |
| MscI | TGGCCA | 1 cut(s) | 477 |
| MseI | TTAA | 1 cut(s) | 446 |
| Msp20I | TGGCCA | 1 cut(s) | 477 |
| MspI | CCGG | 1 cut(s) | 219 |
| MspR9I | CCNGG | 1 cut(s) | 301 |
| MunI | CAATTG | 2 cut(s) | 98, 569 |
| MvaI | CCWGG | 1 cut(s) | 301 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 166 |
| NlaIII | CATG | 2 cut(s) | 376, 407 |
| NlaIV | GGNNCC | 1 cut(s) | 208 |
| PdmI | GAANNNNTTC | 2 cut(s) | 53, 524 |
| PkrI | GCNGC | 4 cut(s) | 168, 217, 295, 298 |
| PleI | GAGTC | 1 cut(s) | 180 |
| PpsI | GAGTC | 1 cut(s) | 180 |
| Psp6I | CCWGG | 1 cut(s) | 299 |
| PspGI | CCWGG | 1 cut(s) | 299 |
| PspN4I | GGNNCC | 1 cut(s) | 208 |
| PspPI | GGNCC | 2 cut(s) | 206, 407 |
| PstI | CTGCAG | 1 cut(s) | 298 |
| RsaI | GTAC | 5 cut(s) | 93, 113, 524, 564, 584 |
| RsaNI | GTAC | 5 cut(s) | 92, 112, 523, 563, 583 |
| SalI | GTCGAC | 1 cut(s) | 275 |
| SaqAI | TTAA | 1 cut(s) | 446 |
| SatI | GCNGC | 4 cut(s) | 167, 216, 294, 297 |
| Sau96I | GGNCC | 2 cut(s) | 206, 407 |
| ScaI | AGTACT | 1 cut(s) | 524 |
| SchI | GAGTC | 1 cut(s) | 181 |
| ScrFI | CCNGG | 1 cut(s) | 301 |
| SduI | GDGCHC | 1 cut(s) | 434 |
| SfcI | CTRYAG | 1 cut(s) | 294 |
| SgrAI | CRCCGGYG | 1 cut(s) | 218 |
| SinI | GGWCC | 1 cut(s) | 206 |
| Sse9I | AATT | 7 cut(s) | 98, 320, 381, 437, 443, 464, 569 |
| SsiI | CCGC | 1 cut(s) | 216 |
| SspMI | CTAG | 1 cut(s) | 267 |
| StyD4I | CCNGG | 1 cut(s) | 299 |
| StyI | CCWWGG | 1 cut(s) | 115 |
| TaaI | ACNGT | 3 cut(s) | 153, 511, 587 |
| TaiI | ACGT | 1 cut(s) | 238 |
| TaqI | TCGA | 1 cut(s) | 276 |
| TasI | AATT | 7 cut(s) | 98, 320, 381, 437, 443, 464, 569 |
| TatI | WGTACW | 1 cut(s) | 522 |
| TauI | GCSGC | 1 cut(s) | 218 |
| Tru1I | TTAA | 1 cut(s) | 446 |
| Tru9I | TTAA | 1 cut(s) | 446 |
| TscAI | CASTG | 1 cut(s) | 514 |
| TseI | GCWGC | 3 cut(s) | 166, 293, 296 |
| TspDTI | ATGAA | 3 cut(s) | 17, 38, 158 |
| TspGWI | ACGGA | 1 cut(s) | 294 |
| TspRI | CASTG | 1 cut(s) | 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 206 |
| XapI | RAATTY | 2 cut(s) | 320, 381 |
| XmiI | GTMKAC | 1 cut(s) | 276 |
| XmnI | GAANNNNTTC | 2 cut(s) | 53, 524 |
| XspI | CTAG | 1 cut(s) | 267 |
| ZrmI | AGTACT | 1 cut(s) | 524 |