FvH4_4g20540
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000115
Physical Location & Seq
Reverse (-)
23733792 .. 23735157
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20540.t1

Sequence Viewer

Length: 780 bp
ATGTCAAGGCTCGACCTTGTTAAAACAGTGAGCCTCAGCAATATGCTGTTGCACCGAAGCTTGAAAAACAACAGTATACCCTGTTATACCTACCTCAAGAAATTGGTAATTTCTGATGCCAAGGTCGTGTTCATTATAAAGCATCACTCATGGTTTTTCTGGCAAATGCCAGCAGTGGATGTTACAGCAAATATTAGGCTTGGTACAGACCTTGGCATGCCCTCCAATTGTATTGCCTATTTGCTAAAATCTCATACTAGAATTGTCACGAAAAAGCATGAAGAGTTCAGTCAGATTGTTAGCAATGTCAAAGGAATGGGATTCGGCCCCAGAAAGATATTATTTGTGCAAGCCATGGGCGCATTATCCGTGAAGCAAACAGCATGGAGAGTTAAGGAACAGGTGTATAAGAGGTGGGGATGGTCTGAGAGTGATATTCGTTCTGCATTTAGGATGTTACCGCTGTGTATGCTTGTTTCGGAGGAGAAAATAATGGGAGTAATGGAGTTTTTAGTGAACACAATGGGATGGAAATCAGGAGAAGTTGCAGAGTATCCGTATGTTCTTTCGTACAGCTTGGAAAAGAGAATCATCCCTAGGTGTTCGGTTATTCGAGTGTTGTTGTTGAAAGGATTGATAGAAGAGATGGCTCTGACTTTGGCTAGTGTTTCTACGTGTCCAGAGGAGTATTTCTTAAGTAGGTTTGTCACCAGATATCTGGACCGAGTGCCTCAATTGTTGAATGTATACCACCAGAAAGTGGACGTGGAGGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

260

Amino Acids

29.86

Weight (kDa)

9.44

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 128 - 231 4.9e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 760
AccI GTMKAC 2 cut(s) 76, 747
AciI CCGC 1 cut(s) 461
AfaI GTAC 2 cut(s) 205, 572
AfiI CCNNNNNNNGG 1 cut(s) 760
AflII CTTAAG 1 cut(s) 694
AflIII ACRYGT 1 cut(s) 674
AgsI TTSAA 3 cut(s) 64, 628, 742
AjiI CACGTC 1 cut(s) 766
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 2 cut(s) 60, 576
AluI AGCT 2 cut(s) 60, 576
AoxI GGCC 1 cut(s) 325
AspA2I CCTAGG 1 cut(s) 596
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 326, 721
AsuHPI GGTGA 1 cut(s) 700
AvaII GGWCC 1 cut(s) 721
AvrII CCTAGG 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 414, 522, 640
BciVI GTATCC 1 cut(s) 564
BfaI CTAG 3 cut(s) 258, 597, 663
BfrI CTTAAG 1 cut(s) 694
BfuI GTATCC 1 cut(s) 564
BlnI CCTAGG 1 cut(s) 596
Bme18I GGWCC 1 cut(s) 721
BmgBI CACGTC 1 cut(s) 766
BmgT120I GGNCC 2 cut(s) 326, 721
BmiI GGNNCC 1 cut(s) 328
BmsI GCATC 2 cut(s) 106, 151
Bpu10I CCTNAGC 1 cut(s) 35
BpuEI CTTGAG 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 675
BsaBI GATNNNNATC 1 cut(s) 532
BsaJI CCNNGG 4 cut(s) 120, 211, 354, 596
Bsc4I CCNNNNNNNGG 1 cut(s) 760
Bse3DI GCAATG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 532
BseDI CCNNGG 4 cut(s) 120, 211, 354, 596
BseGI GGATG 6 cut(s) 184, 425, 459, 533, 591, 778
BseJI GATNNNNATC 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 760
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 2 cut(s) 49, 417
BseRI GAGGAG 2 cut(s) 497, 698
BshFI GGCC 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 760
BsnI GGCC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 1 cut(s) 461
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 48, 418
BspLI GGNNCC 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 120, 211, 354, 596
BssNAI GTATAC 2 cut(s) 77, 748
BssT1I CCWWGG 4 cut(s) 120, 211, 354, 596
Bst1107I GTATAC 2 cut(s) 77, 748
Bst4CI ACNGT 2 cut(s) 28, 74
Bst6I CTCTTC 2 cut(s) 276, 636
BstAFI CTTAAG 1 cut(s) 694
BstBAI YACGTR 1 cut(s) 675
BstC8I GCNNGC 3 cut(s) 171, 218, 351
BstDEI CTNAG 2 cut(s) 35, 426
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 6 cut(s) 184, 425, 459, 533, 591, 778
BstHHI GCGC 1 cut(s) 362
BstMWI GCNNNNNNNGC 2 cut(s) 359, 469
BstNSI RCATGY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 718
BstZ17I GTATAC 2 cut(s) 77, 748
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 354
BtrI CACGTC 1 cut(s) 766
BtsCI GGATG 6 cut(s) 184, 425, 459, 533, 591, 778
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 33, 180
Cac8I GCNNGC 3 cut(s) 171, 218, 351
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 326, 721
Csp6I GTAC 2 cut(s) 204, 571
CviAII CATG 5 cut(s) 150, 217, 278, 355, 384
CviJI RGCY 9 cut(s) 10, 33, 60, 199, 327, 353, 576, 650, 662
CviKI_1 RGCY 9 cut(s) 10, 33, 60, 199, 327, 353, 576, 650, 662
CviQI GTAC 2 cut(s) 204, 571
DdeI CTNAG 2 cut(s) 35, 426
Eam1104I CTCTTC 2 cut(s) 276, 636
EarI CTCTTC 2 cut(s) 276, 636
Eco130I CCWWGG 4 cut(s) 120, 211, 354, 596
Eco32I GATATC 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 721
EcoRV GATATC 1 cut(s) 716
EcoT14I CCWWGG 4 cut(s) 120, 211, 354, 596
ErhI CCWWGG 4 cut(s) 120, 211, 354, 596
FaeI CATG 5 cut(s) 153, 220, 281, 358, 387
FatI CATG 5 cut(s) 149, 216, 277, 354, 383
FblI GTMKAC 2 cut(s) 76, 747
FokI GGATG 5 cut(s) 191, 432, 466, 540, 578
FspBI CTAG 3 cut(s) 258, 597, 663
GlaI GCGC 1 cut(s) 361
HaeIII GGCC 1 cut(s) 327
HhaI GCGC 1 cut(s) 362
Hin1II CATG 5 cut(s) 153, 220, 281, 358, 387
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 2 cut(s) 321, 588
HphI GGTGA 1 cut(s) 700
Hpy166II GTNNAC 4 cut(s) 77, 517, 748, 763
Hpy188I TCNGA 5 cut(s) 115, 294, 427, 481, 654
Hpy188III TCNNGA 5 cut(s) 97, 268, 537, 680, 719
Hpy8I GTNNAC 4 cut(s) 77, 517, 748, 763
HpyCH4III ACNGT 2 cut(s) 28, 74
HpyCH4IV ACGT 2 cut(s) 674, 765
HpyCH4V TGCA 4 cut(s) 52, 349, 446, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 469
HpyF3I CTNAG 2 cut(s) 35, 426
HpySE526I ACGT 2 cut(s) 674, 765
Hsp92II CATG 5 cut(s) 153, 220, 281, 358, 387
HspAI GCGC 1 cut(s) 360
LweI GCATC 2 cut(s) 106, 151
MaeI CTAG 3 cut(s) 258, 597, 663
MaeII ACGT 2 cut(s) 674, 765
MaeIII GTNAC 4 cut(s) 181, 265, 456, 706
MboII GAAGA 2 cut(s) 293, 653
MfeI CAATTG 2 cut(s) 226, 734
MluCI AATT 5 cut(s) 101, 108, 226, 261, 734
MnlI CCTC 8 cut(s) 44, 104, 232, 405, 475, 676, 741, 763
MseI TTAA 3 cut(s) 21, 393, 695
MspA1I CMGCKG 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 694
MunI CAATTG 2 cut(s) 226, 734
MwoI GCNNNNNNNGC 2 cut(s) 359, 469
NcoI CCATGG 1 cut(s) 354
NlaIII CATG 5 cut(s) 153, 220, 281, 358, 387
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 2 cut(s) 265, 706
NspI RCATGY 1 cut(s) 220
PaeI GCATGC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 321, 588
PflMI CCANNNNNTGG 1 cut(s) 760
Ppu21I YACGTR 1 cut(s) 675
PsiI TTATAA 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 2 cut(s) 326, 721
RsaI GTAC 2 cut(s) 205, 572
RsaNI GTAC 2 cut(s) 204, 571
SaqAI TTAA 3 cut(s) 21, 393, 695
Sau96I GGNCC 2 cut(s) 326, 721
SfaNI GCATC 2 cut(s) 106, 151
SinI GGWCC 1 cut(s) 721
SmlI CTYRAG 2 cut(s) 95, 694
SmoI CTYRAG 2 cut(s) 95, 694
SphI GCATGC 1 cut(s) 220
Sse9I AATT 5 cut(s) 101, 108, 226, 261, 734
SsiI CCGC 1 cut(s) 461
SspI AATATT 1 cut(s) 193
SspMI CTAG 3 cut(s) 258, 597, 663
StyI CCWWGG 4 cut(s) 120, 211, 354, 596
TaaI ACNGT 2 cut(s) 28, 74
TaiI ACGT 2 cut(s) 677, 768
TaqI TCGA 2 cut(s) 12, 613
TaqII GACCGA 1 cut(s) 738
TasI AATT 5 cut(s) 101, 108, 226, 261, 734
TfiI GAWTC 2 cut(s) 321, 588
Tru1I TTAA 3 cut(s) 21, 393, 695
Tru9I TTAA 3 cut(s) 21, 393, 695
TscAI CASTG 2 cut(s) 33, 180
TseFI GTSAC 2 cut(s) 265, 706
Tsp45I GTSAC 2 cut(s) 265, 706
TspDTI ATGAA 2 cut(s) 121, 294
TspGWI ACGGA 2 cut(s) 358, 546
TspRI CASTG 2 cut(s) 33, 180
Van91I CCANNNNNTGG 1 cut(s) 760
Vha464I CTTAAG 1 cut(s) 694
VpaK11BI GGWCC 1 cut(s) 721
XceI RCATGY 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 596
XmiI GTMKAC 2 cut(s) 76, 747
XspI CTAG 3 cut(s) 258, 597, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.