MD15G1168300.v1.1

Calmodulin-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
12942859 .. 12944764
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1168300.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGTGTTAACCACCGTACTTTTACTAGCAGTTTTATTCATTGCTGGCCTCGTTAATATTTTCATTCTTTTTCCCACCCCCAAGCTCCTTGCTTGGTTTCAATCTTTGTCCATACCCTACTCCACTCCTACTACCACTCCAAGCAAGGACAAAAATAATCTTGTTATGAATAGTATTAATCCGCAGCCAAAAGTAGAAGATCGGGCGGTGGAGCTGAAGCAAGTGTTTGCCACCTTCGACAAGAACAGTGACGGGTTCATCACAACGCAGGAGCTCAAGGAGTCACTGAAGAACATAAGAATTTGTATGAGTGATGCGGAGGTGGAAGAAATGGTGAAGAAGGTGGATGCTAATGGAGATGGGTTGATTGATTTTGATGAGTTTTGCATGCTGTGCGGGTCCATGCGCCGTCGGGAAGATGGGGGAGCGGAGGAGGAAGAGTTGAAGGAGGCTTTTGGTGTGTTTGATAAGGATAAAGATGGGTTGATATCGGTGGAGGAGTTGGCAGTGGTGTTGTGTTCTTTGGGATTGAGGGAAGGGAGTAAGGTGGAGGATTGTAAGGAGATGGTGAGGAAAGTTGATAGGGATGGAGATGGTATGGTTAATTTTGATGAGTTCAAGATGATGATGAAAGTGATACTGGGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

217

Amino Acids

24.12

Weight (kDa)

4.62

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 71 - 98 7.6e-07 EF hand domain
EF-hand_7 PF13499 71 - 129 7.9e-17 EF-hand domain pair
EF-hand_6 PF13405 71 - 98 3e-06 EF-hand domain
EF-hand_8 PF13833 83 - 129 3.8e-07 EF-hand domain pair
EF-hand_1 PF00036 107 - 133 3.5e-07 EF hand domain
EF-hand_7 PF13499 145 - 211 2.1e-13 EF-hand domain pair
EF-hand_1 PF00036 147 - 172 1.2e-06 EF hand domain
EF-hand_6 PF13405 147 - 176 9.5e-07 EF-hand domain
EF-hand_8 PF13833 163 - 211 1.4e-06 EF-hand domain pair
EF-hand_1 PF00036 185 - 211 1.2e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 428
AciI CCGC 5 cut(s) 182, 206, 317, 396, 428
AcsI RAATTY 1 cut(s) 300
AcuI CTGAAG 2 cut(s) 236, 308
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 3 cut(s) 101, 445, 619
AluBI AGCT 3 cut(s) 85, 214, 274
AluI AGCT 3 cut(s) 85, 214, 274
Alw21I GWGCWC 1 cut(s) 276
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 300
AseI ATTAAT 1 cut(s) 177
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 2 cut(s) 346, 580
AvaII GGWCC 1 cut(s) 399
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 196
BccI CCATC 6 cut(s) 353, 413, 473, 559, 581, 587
BceAI ACGGC 1 cut(s) 393
BfaI CTAG 1 cut(s) 26
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 400
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 2 cut(s) 304, 337
BmuI ACTGGG 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 121, 151, 425, 455
Bse1I ACTGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 2 cut(s) 352, 592
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 645
BseRI GAGGAG 2 cut(s) 446, 512
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 276
BsnI GGCC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 5 cut(s) 182, 206, 317, 396, 428
BspANI GGCC 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 400
BsrBI CCGCTC 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 645
BssMI GATC 1 cut(s) 199
Bst4CI ACNGT 2 cut(s) 16, 248
Bst6I CTCTTC 1 cut(s) 432
BstAPI GCANNNNNTGC 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 46, 389
BstF5I GGATG 2 cut(s) 352, 592
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 391
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 2 cut(s) 352, 592
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 3 cut(s) 253, 284, 513
Cac8I GCNNGC 2 cut(s) 46, 389
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 399
Csp6I GTAC 1 cut(s) 17
CviAII CATG 2 cut(s) 388, 403
CviJI RGCY 6 cut(s) 48, 85, 187, 214, 274, 452
CviKI_1 RGCY 6 cut(s) 48, 85, 187, 214, 274, 452
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco32I GATATC 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 399
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 2 cut(s) 236, 308
EcoICRI GAGCTC 1 cut(s) 274
EcoRV GATATC 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 2 cut(s) 391, 406
FaiI YATR 7 cut(s) 113, 167, 296, 308, 389, 404, 599
FatI CATG 2 cut(s) 387, 402
FauI CCCGC 1 cut(s) 389
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 2 cut(s) 359, 599
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 407
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 48
HhaI GCGC 1 cut(s) 408
Hin1II CATG 2 cut(s) 391, 406
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 281
HpaI GTTAAC 1 cut(s) 9
HphI GGTGA 2 cut(s) 346, 580
Hpy166II GTNNAC 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 413, 619
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 414
HpyAV CCTTC 4 cut(s) 244, 334, 439, 530
HpyCH4III ACNGT 2 cut(s) 16, 248
HpyCH4V TGCA 1 cut(s) 387
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
Hsp92II CATG 2 cut(s) 391, 406
HspAI GCGC 1 cut(s) 406
KspAI GTTAAC 1 cut(s) 9
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 4 cut(s) 90, 211, 271, 425
LpnPI CCDG 3 cut(s) 30, 254, 626
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 304, 337
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 248, 282
MalI GATC 1 cut(s) 201
MbiI CCGCTC 1 cut(s) 428
MboI GATC 1 cut(s) 199
MboII GAAGA 6 cut(s) 209, 301, 338, 349, 428, 449
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 2 cut(s) 300, 604
MlyI GAGTC 1 cut(s) 290
MseI TTAA 4 cut(s) 8, 54, 177, 603
MwoI GCNNNNNNNGC 1 cut(s) 393
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 391, 406
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 248, 282
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PshBI ATTAAT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 399
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 4 cut(s) 8, 54, 177, 603
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 1 cut(s) 290
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 87, 216, 236, 276, 324, 345, 549
SfaNI GCATC 2 cut(s) 304, 337
SinI GGWCC 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SphI GCATGC 1 cut(s) 391
Sse9I AATT 2 cut(s) 300, 604
SsiI CCGC 5 cut(s) 182, 206, 317, 396, 428
SspI AATATT 1 cut(s) 58
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 276
TaaI ACNGT 2 cut(s) 16, 248
TaqI TCGA 1 cut(s) 237
TasI AATT 2 cut(s) 300, 604
Tru1I TTAA 4 cut(s) 8, 54, 177, 603
Tru9I TTAA 4 cut(s) 8, 54, 177, 603
TscAI CASTG 3 cut(s) 253, 291, 513
TseFI GTSAC 2 cut(s) 248, 282
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 2 cut(s) 248, 282
TspDTI ATGAA 5 cut(s) 28, 52, 182, 247, 644
TspRI CASTG 3 cut(s) 253, 291, 513
VpaK11BI GGWCC 1 cut(s) 399
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 1 cut(s) 300
XceI RCATGY 1 cut(s) 391
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.