Rmu_sc0005710.1_g000001
ERF Family

Mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005710.1
Physical Location & Seq
Forward (+)
5196 .. 5846
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005710.1_g000001.1.cds

Sequence Viewer

Length: 651 bp
atgacttatttgccctcacacccaaaagtccttttagctgatcctgagaaaaccctttcacccgagattgagtttttcagctctgttgggcactcaagggtggaccttgctagagttcttagttttaattcacatctgttgtcaagaagcttggagaatcagattgtgccctcttataatttgctcaggaatatgatttcccaggagaatgttgtggcggttttgaagcacaagtcttggatgttcttggagaatcattccaggaatgtgatgcccaatattgaggctttgagagagttgggtatgcccaaagcatgcatttctctattgcttgctcatgacacccaagtgttgatgcacaatcatgatgagcttgttcagcttgtgaatgaggtcaatgggatgggatttgatttgaagaagtcaacttttgttgttgcactgagaacattgtgtgggaagagcagtatggccatatggaatcaaaatcgcaagatttacaagaggagttggggttggtctgatgatgatgttatctctgcttttaggaagagccctcagtgtatgattttgtctgagaagaagattatgcagacaatggattttctggtgaataagataggatggtctgcatcaatgattcccacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

216

Amino Acids

24.67

Weight (kDa)

8.99

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 471
AgsI TTSAA 2 cut(s) 226, 418
AjnI CCWGG 2 cut(s) 201, 260
AleI CACNNNNGTG 1 cut(s) 347
AluBI AGCT 5 cut(s) 38, 81, 150, 373, 382
AluI AGCT 5 cut(s) 38, 81, 150, 373, 382
AlwI GGATC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 1 cut(s) 471
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 2 cut(s) 51, 622
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 2 cut(s) 93, 171
BalI TGGCCA 1 cut(s) 473
BanII GRGCYC 1 cut(s) 557
BccI CCATC 2 cut(s) 397, 618
BciT130I CCWGG 2 cut(s) 203, 262
BfaI CTAG 1 cut(s) 111
Bme1390I CCNGG 2 cut(s) 203, 262
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 203, 262
BmsI GCATC 3 cut(s) 261, 345, 641
Bpu10I CCTNAGC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 201
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
BseBI CCWGG 2 cut(s) 203, 262
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 246, 408, 629
BseMII CTCAG 5 cut(s) 36, 199, 434, 567, 572
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 2 cut(s) 93, 171
BshFI GGCC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 62
BsnI GGCC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 3 cut(s) 93, 171, 557
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 5 cut(s) 37, 198, 435, 568, 571
BspHI TCATGA 2 cut(s) 337, 364
BspPI GGATC 1 cut(s) 35
BspQI GCTCTTC 2 cut(s) 455, 545
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 203, 262
Bst6I CTCTTC 2 cut(s) 455, 545
BstC8I GCNNGC 2 cut(s) 316, 333
BstDEI CTNAG 6 cut(s) 45, 119, 185, 443, 558, 576
BstF5I GGATG 3 cut(s) 246, 408, 629
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 2 cut(s) 203, 262
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 201, 260
BstSLI GKGCMC 2 cut(s) 93, 171
BsuRI GGCC 1 cut(s) 473
BtsCI GGATG 3 cut(s) 246, 408, 629
BtsIMutI CAGTG 2 cut(s) 440, 566
Cac8I GCNNGC 2 cut(s) 316, 333
CciI TCATGA 2 cut(s) 337, 364
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 3 cut(s) 315, 338, 365
CviJI RGCY 8 cut(s) 38, 81, 150, 287, 373, 382, 473, 555
CviKI_1 RGCY 8 cut(s) 38, 81, 150, 287, 373, 382, 473, 555
DdeI CTNAG 6 cut(s) 45, 119, 185, 443, 558, 576
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 2 cut(s) 455, 545
EarI CTCTTC 2 cut(s) 455, 545
Eco24I GRGCYC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 201, 260
EcoT22I ATGCAT 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 557
FaeI CATG 3 cut(s) 318, 341, 368
FatI CATG 3 cut(s) 314, 337, 364
FauNDI CATATG 1 cut(s) 476
FokI GGATG 3 cut(s) 253, 415, 636
FriOI GRGCYC 1 cut(s) 557
FspBI CTAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 473
Hin1II CATG 3 cut(s) 318, 341, 368
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 4 cut(s) 157, 253, 481, 640
HphI GGTGA 2 cut(s) 51, 622
Hpy166II GTNNAC 2 cut(s) 103, 426
Hpy188I TCNGA 3 cut(s) 162, 523, 577
Hpy188III TCNNGA 5 cut(s) 44, 144, 187, 338, 365
Hpy8I GTNNAC 2 cut(s) 103, 426
HpyCH4V TGCA 5 cut(s) 318, 358, 440, 592, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 6 cut(s) 45, 119, 185, 443, 558, 576
Hsp92II CATG 3 cut(s) 318, 341, 368
Kzo9I GATC 1 cut(s) 40
LguI GCTCTTC 2 cut(s) 455, 545
LpnPI CCDG 7 cut(s) 57, 172, 188, 215, 247, 274, 593
LweI GCATC 3 cut(s) 261, 345, 641
MaeI CTAG 1 cut(s) 111
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 5 cut(s) 430, 472, 562, 592, 595
MhlI GDGCHC 3 cut(s) 93, 171, 557
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 2 cut(s) 127, 178
MluNI TGGCCA 1 cut(s) 473
MnlI CCTC 6 cut(s) 25, 181, 277, 385, 498, 567
Mox20I TGGCCA 1 cut(s) 473
Mph1103I ATGCAT 1 cut(s) 320
MscI TGGCCA 1 cut(s) 473
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 347, 363
Msp20I TGGCCA 1 cut(s) 473
MspR9I CCNGG 2 cut(s) 203, 262
MvaI CCWGG 2 cut(s) 203, 262
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeI CATATG 1 cut(s) 476
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 318, 341, 368
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 1 cut(s) 318
OliI CACNNNNGTG 1 cut(s) 347
PaeI GCATGC 1 cut(s) 318
PagI TCATGA 2 cut(s) 337, 364
PciSI GCTCTTC 2 cut(s) 455, 545
PfeI GAWTC 4 cut(s) 157, 253, 481, 640
PfoI TCCNGGA 1 cut(s) 260
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 201, 260
PspGI CCWGG 2 cut(s) 201, 260
PspPI GGNCC 1 cut(s) 103
RseI CAYNNNNRTG 2 cut(s) 347, 363
SapI GCTCTTC 2 cut(s) 455, 545
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 2 cut(s) 203, 262
SduI GDGCHC 3 cut(s) 93, 171, 557
SetI ASST 7 cut(s) 40, 83, 108, 152, 375, 384, 396
SfaNI GCATC 3 cut(s) 261, 345, 641
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 347, 363
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SphI GCATGC 1 cut(s) 318
Sse9I AATT 2 cut(s) 127, 178
SsiI CCGC 1 cut(s) 218
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 201, 260
TasI AATT 2 cut(s) 127, 178
TfiI GAWTC 4 cut(s) 157, 253, 481, 640
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 2 cut(s) 447, 566
TspRI CASTG 2 cut(s) 447, 566
VpaK11BI GGWCC 1 cut(s) 103
XceI RCATGY 1 cut(s) 318
XspI CTAG 1 cut(s) 111
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.