Prupe.2G040300_v2.0.a1
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000115
Physical Location & Seq
Reverse (-)
4418091 .. 4420435
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G040300.1

Sequence Viewer

Length: 888 bp
ATGGATTCTCTCAAACCCAGATCTTGCAAAACTCGCCCACAACTTCTTTTAGCCAGCCCTGAGCAAACCCTTTTGCCAAAGCTTGAGTTTTTCAGCTCTCTTGGAGTTTCAAGGGAGGACCTTGCAAAAACGCTGGTTCTGAATCCAAGTCTTTTGCAAAGAAGCTTGGACAAACAGCTTGTGCCCACTTATAATTTCCTGAGGAGTCTGCTTCCTGAGAAAAATATCGTTTCTGTTTTCAAGTACAACTCGTCGATTTTCATGCAAGGCCACACCAAGAAAGTAGTGCCAAATATCGCGATTTTGAGAGAATTAGGTATGCCTAAATCATGCATTTCTCTGTTGCTAGCTCATTGTACGCATGCTTTGATACATGATACTGAAAAGTTTCGCCAAGTTGTGAAAGAGGTTAAGGAAATGGGTTTTAACCTGGAAAAGTCGATTTCCGTGTTGGCAATAAGCATAATGTGTCGTTCATTTTATAAGCCGATATTGAAGCGAAATTGTGAAGTTTATAGCAGGTGGGGTTGGTCGGAGGCTGATGTTCTCTCTGCTTTCAGGAGGCGCCCGGAGTGTATTTCTCTGTCAGAGAAGAAAATAATGCAAACAATGGATCTTTTAGTGAACAAGATGGGATGGTCGTCAGAAATAATTCTCAAGTCGCCATATGTTTTGAATTATAGTTTGCAGAAGAGAATCATCCCTAGGTGTTCGGTTGTTAGAGTATTGTTGTCGAAAGGATTGATAAATACTGAAAAACTGAGCTTACATTCTGTGTTTTTACCTGTGGAGAAGGAGTTCTTGGAGAGATTTGTTGACAGTTTTCTGGGTGAAGTACCTCAGTTGTTGTGTGTATACCGAGGAAAAGTGGATATCCAGGACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

296

Amino Acids

33.85

Weight (kDa)

9.51

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 192, 483
AarI CACCTGC 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 510
AccB1I GGYRCC 1 cut(s) 564
AccI GTMKAC 1 cut(s) 855
AccII CGCG 1 cut(s) 299
AclWI GGATC 1 cut(s) 621
AcyI GRCGYC 1 cut(s) 565
AfaI GTAC 3 cut(s) 245, 358, 837
AgsI TTSAA 4 cut(s) 111, 241, 496, 676
AjnI CCWGG 2 cut(s) 429, 876
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AloI GAACNNNNNNTCC 2 cut(s) 782, 814
AluBI AGCT 6 cut(s) 82, 96, 165, 178, 350, 765
AluI AGCT 6 cut(s) 82, 96, 165, 178, 350, 765
AlwI GGATC 1 cut(s) 621
AoxI GGCC 1 cut(s) 268
Asp700I GAANNNNTTC 3 cut(s) 387, 651, 797
AspA2I CCTAGG 1 cut(s) 704
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 842
AsuNHI GCTAGC 1 cut(s) 346
AvaII GGWCC 1 cut(s) 118
AvrII CCTAGG 1 cut(s) 704
AxyI CCTNAGG 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 186
BanI GGYRCC 1 cut(s) 564
BccI CCATC 2 cut(s) 625, 630
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 2 cut(s) 431, 878
BcnI CCSGG 1 cut(s) 569
BfaI CTAG 2 cut(s) 347, 705
BfoI RGCGCY 1 cut(s) 568
BfuAI ACCTGC 1 cut(s) 510
BglII AGATCT 1 cut(s) 20
BlnI CCTAGG 1 cut(s) 704
Bme1390I CCNGG 3 cut(s) 431, 569, 878
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 566
BmrFI CCNGG 3 cut(s) 431, 569, 878
BmtI GCTAGC 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 104, 641
BpuMI CCSGG 1 cut(s) 569
BsaHI GRCGYC 1 cut(s) 565
BsaJI CCNNGG 2 cut(s) 704, 859
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bse21I CCTNAGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 431, 878
BseDI CCNNGG 2 cut(s) 704, 859
BseGI GGATG 2 cut(s) 641, 699
BseMII CTCAG 5 cut(s) 51, 191, 207, 752, 854
BseRI GAGGAG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 186
Bsh1236I CGCG 1 cut(s) 299
BshFI GGCC 1 cut(s) 270
BshNI GGYRCC 1 cut(s) 564
BsiSI CCGG 1 cut(s) 569
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 2 cut(s) 20, 613
Bsp68I TCGCGA 1 cut(s) 299
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 5 cut(s) 52, 192, 208, 753, 853
BspFNI CGCG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 566
BspMI ACCTGC 1 cut(s) 510
BspOI GCTAGC 1 cut(s) 350
BspPI GGATC 1 cut(s) 621
BspT107I GGYRCC 1 cut(s) 564
BssECI CCNNGG 2 cut(s) 704, 859
BssMI GATC 2 cut(s) 20, 613
BssNAI GTATAC 1 cut(s) 856
BssNI GRCGYC 1 cut(s) 565
BssT1I CCWWGG 1 cut(s) 704
Bst1107I GTATAC 1 cut(s) 856
Bst2UI CCWGG 2 cut(s) 431, 878
Bst4CI ACNGT 1 cut(s) 821
Bst6I CTCTTC 1 cut(s) 686
BstACI GRCGYC 1 cut(s) 565
BstC8I GCNNGC 3 cut(s) 55, 348, 363
BstDEI CTNAG 5 cut(s) 60, 200, 216, 761, 840
BstF5I GGATG 2 cut(s) 641, 699
BstFNI CGCG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 2 cut(s) 23, 616
BstMBI GATC 2 cut(s) 20, 613
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstNI CCWGG 2 cut(s) 431, 878
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 429, 567, 876
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 299
BstX2I RGATCY 2 cut(s) 20, 613
BstYI RGATCY 2 cut(s) 20, 613
BstZ17I GTATAC 1 cut(s) 856
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 641, 699
BtuMI TCGCGA 1 cut(s) 299
BveI ACCTGC 1 cut(s) 510
Cac8I GCNNGC 3 cut(s) 55, 348, 363
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 3 cut(s) 244, 357, 836
CviAII CATG 4 cut(s) 262, 330, 362, 374
CviQI GTAC 3 cut(s) 244, 357, 836
DdeI CTNAG 5 cut(s) 60, 200, 216, 761, 840
DinI GGCGCC 1 cut(s) 566
DpnI GATC 2 cut(s) 22, 615
DpnII GATC 2 cut(s) 20, 613
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
Eco130I CCWWGG 1 cut(s) 704
Eco32I GATATC 1 cut(s) 874
Eco47I GGWCC 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 429, 876
EcoRV GATATC 1 cut(s) 874
EcoT14I CCWWGG 1 cut(s) 704
EcoT22I ATGCAT 1 cut(s) 335
EgeI GGCGCC 1 cut(s) 566
EheI GGCGCC 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 704
FaeI CATG 4 cut(s) 265, 333, 365, 377
FalI AAGNNNNNCTT 2 cut(s) 785, 817
FatI CATG 4 cut(s) 261, 329, 361, 373
FauNDI CATATG 1 cut(s) 667
FblI GTMKAC 1 cut(s) 855
FokI GGATG 2 cut(s) 648, 686
FspBI CTAG 2 cut(s) 347, 705
GlaI GCGC 1 cut(s) 566
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 569
HhaI GCGC 1 cut(s) 567
Hin1I GRCGYC 1 cut(s) 565
Hin1II CATG 4 cut(s) 265, 333, 365, 377
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 2 cut(s) 80, 163
HinfI GANTC 4 cut(s) 5, 142, 205, 696
HpaII CCGG 1 cut(s) 569
HphI GGTGA 1 cut(s) 842
Hpy166II GTNNAC 3 cut(s) 625, 817, 856
Hpy188I TCNGA 4 cut(s) 141, 535, 589, 646
Hpy188III TCNNGA 4 cut(s) 199, 215, 298, 559
Hpy8I GTNNAC 3 cut(s) 625, 817, 856
Hpy99I CGWCG 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 787
HpyCH4III ACNGT 1 cut(s) 821
HpyCH4IV ACGT 1 cut(s) 882
HpyCH4V TGCA 7 cut(s) 27, 125, 157, 265, 333, 604, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 5 cut(s) 60, 200, 216, 761, 840
HpySE526I ACGT 1 cut(s) 882
Hsp92I GRCGYC 1 cut(s) 565
Hsp92II CATG 4 cut(s) 265, 333, 365, 377
HspAI GCGC 1 cut(s) 565
KasI GGCGCC 1 cut(s) 564
Kzo9I GATC 2 cut(s) 20, 613
MaeI CTAG 2 cut(s) 347, 705
MaeII ACGT 1 cut(s) 882
MalI GATC 2 cut(s) 22, 615
MboI GATC 2 cut(s) 20, 613
MboII GAAGA 2 cut(s) 604, 703
MflI RGATCY 2 cut(s) 20, 613
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 5 cut(s) 193, 311, 502, 651, 676
Mly113I GGCGCC 1 cut(s) 565
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 7 cut(s) 109, 195, 400, 529, 555, 849, 854
Mph1103I ATGCAT 1 cut(s) 335
MroXI GAANNNNTTC 3 cut(s) 387, 651, 797
MseI TTAA 2 cut(s) 411, 426
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 3 cut(s) 431, 569, 878
MvaI CCWGG 2 cut(s) 431, 878
MvnI CGCG 1 cut(s) 299
MwoI GCNNNNNNNGC 1 cut(s) 33
NarI GGCGCC 1 cut(s) 565
NciI CCSGG 1 cut(s) 569
NdeI CATATG 1 cut(s) 667
NdeII GATC 2 cut(s) 20, 613
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 4 cut(s) 265, 333, 365, 377
NlaIV GGNNCC 1 cut(s) 566
NruI TCGCGA 1 cut(s) 299
NsiI ATGCAT 1 cut(s) 335
NspI RCATGY 1 cut(s) 365
PaeI GCATGC 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 510
PdmI GAANNNNTTC 3 cut(s) 387, 651, 797
PfeI GAWTC 3 cut(s) 5, 142, 696
PfoI TCCNGGA 1 cut(s) 876
PleI GAGTC 1 cut(s) 213
PluTI GGCGCC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 213
PpuMI RGGWCCY 1 cut(s) 118
PsiI TTATAA 2 cut(s) 192, 483
Psp5II RGGWCCY 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 429, 876
PspGI CCWGG 2 cut(s) 429, 876
PspN4I GGNNCC 1 cut(s) 566
PspPI GGNCC 1 cut(s) 118
PspPPI RGGWCCY 1 cut(s) 118
PsuI RGATCY 2 cut(s) 20, 613
RruI TCGCGA 1 cut(s) 299
RsaI GTAC 3 cut(s) 245, 358, 837
RsaNI GTAC 3 cut(s) 244, 357, 836
SaqAI TTAA 2 cut(s) 411, 426
Sau3AI GATC 2 cut(s) 20, 613
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 3 cut(s) 431, 569, 878
SduI GDGCHC 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 566
SinI GGWCC 1 cut(s) 118
SmlI CTYRAG 2 cut(s) 83, 656
SmoI CTYRAG 2 cut(s) 83, 656
SphI GCATGC 1 cut(s) 365
Sse9I AATT 5 cut(s) 193, 311, 502, 651, 676
SspDI GGCGCC 1 cut(s) 564
SspMI CTAG 2 cut(s) 347, 705
StyD4I CCNGG 3 cut(s) 429, 567, 876
StyI CCWWGG 1 cut(s) 704
TaaI ACNGT 1 cut(s) 821
TaiI ACGT 1 cut(s) 885
TaqI TCGA 3 cut(s) 254, 440, 734
TasI AATT 5 cut(s) 193, 311, 502, 651, 676
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 3 cut(s) 5, 142, 696
Tru1I TTAA 2 cut(s) 411, 426
Tru9I TTAA 2 cut(s) 411, 426
TspDTI ATGAA 2 cut(s) 250, 465
TspGWI ACGGA 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 118
XceI RCATGY 1 cut(s) 365
XmaJI CCTAGG 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 855
XmnI GAANNNNTTC 3 cut(s) 387, 651, 797
XspI CTAG 2 cut(s) 347, 705
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.