MD02G1026800.v1.1

Calmodulin-like protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
2046116 .. 2047931
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1026800.v1.1.491

Sequence Viewer

Length: 888 bp
ATGCAGATAGTCGGGCAAAGAACTCCCTCCAAATTAGGGCAGTGTACCCAAGTAGAATTGGAAGTCAACTTTGAGAGTACAAAGACTTTGATAAGACGTCAAAGTCAGTTCTTCTCCTTGCTCTTGGCCTCCTCTTCTTTCTTCTTCTTCTTCCTTATCATCTTCTCCTTAGTTGCTGAAAAAGAAAAAAAAACAGAAAAAATGGCGGTAACCACCGTACTTTTATTAGCAGTTTTATTCATAGCTGGCCTCGTAAATATTTTCTTTCGTTTTCCCACCACCAAGCTCCTTGCTTGGTTTCAATCTTTGTCCAAACCCTACTCCACTCCTACTACCACTCCAAGCAAGGACAAAGATAATCATGTTGTGAATAGTATTAGTCCGCAACCAAAAGTAGCAGATCAGGCGGCGGAGCTGAAGCAATTGTTTGCCACTTTCGACAAGAACAGTGACGGGTTCATCACAAAGCAGGAGCTCAAGGAGTCACTGAAGAATATCAGGATTTTTATGAGTGATTCTGAGGTGGAAGAAATGGTAAAGAAGGTGGATGCTAATGGAGATGGGTTGATTGACTTTGATGAGTTTTGCATGCTGTGCGGGTCCATGCTTCGTCGGGATGATGGGGTAGTGGAGGGCGGAGATGGGGGAGGAGCGGAGGAGGAGGAGGAGTTGAAGGAGGCGTTTGGTGTGTTTGATAAGGATAAAGATGGGTTGATTTCGGTGGAGGAGTTGGCGGTGGTGTTGTGTTCTTTGGGATTGAGAGAGGGGAATAAGGTGGAGGATTGTAAGGAGATGGTGAAGAAAGTTGATAGGGATGGAGATGGTATGGTCAATTTTGATGAGTTCAAGAGGATGATGAAAGGTGGAGGACTTCTATTAGCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

296

Amino Acids

32.94

Weight (kDa)

4.98

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 138 - 165 8.4e-07 EF hand domain
EF-hand_7 PF13499 138 - 196 2.3e-15 EF-hand domain pair
EF-hand_6 PF13405 138 - 165 2.7e-06 EF-hand domain
EF-hand_5 PF13202 139 - 161 9.7e-06 EF hand
EF-hand_8 PF13833 150 - 196 1e-06 EF-hand domain pair
EF-hand_1 PF00036 174 - 200 5.4e-07 EF hand domain
EF-hand_7 PF13499 221 - 287 4.9e-14 EF-hand domain pair
EF-hand_1 PF00036 223 - 248 1.9e-06 EF hand domain
EF-hand_6 PF13405 223 - 252 1.5e-06 EF-hand domain
EF-hand_1 PF00036 261 - 287 8.1e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 102
AatII GACGTC 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 653
AciI CCGC 8 cut(s) 206, 383, 407, 410, 597, 636, 653, 734
AcuI CTGAAG 2 cut(s) 437, 509
AcyI GRCGYC 1 cut(s) 97
AfaI GTAC 3 cut(s) 46, 79, 219
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 3 cut(s) 302, 673, 847
AluBI AGCT 4 cut(s) 245, 286, 415, 475
AluI AGCT 4 cut(s) 245, 286, 415, 475
Alw21I GWGCWC 1 cut(s) 477
AoxI GGCC 2 cut(s) 126, 247
AspS9I GGNCC 1 cut(s) 600
AsuHPI GGTGA 1 cut(s) 808
AvaII GGWCC 1 cut(s) 600
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 7 cut(s) 554, 614, 635, 701, 787, 809, 815
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 1 cut(s) 600
BmiI GGNNCC 1 cut(s) 601
BmsI GCATC 1 cut(s) 538
BpuEI CTTGAG 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 322, 352, 653, 683
Bsc4I CCNNNNNNNGG 1 cut(s) 36
BseGI GGATG 4 cut(s) 553, 622, 820, 858
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 510
BseRI GAGGAG 7 cut(s) 121, 663, 671, 674, 677, 680, 740
BshFI GGCC 2 cut(s) 128, 249
BsiHKAI GWGCWC 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 36
BsnI GGCC 2 cut(s) 128, 249
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 1 cut(s) 400
BspACI CCGC 8 cut(s) 206, 383, 407, 410, 597, 636, 653, 734
BspANI GGCC 2 cut(s) 128, 249
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 653
BssMI GATC 1 cut(s) 400
BssNI GRCGYC 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 217, 449
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 247, 590
BstDEI CTNAG 2 cut(s) 169, 519
BstEII GGTNACC 1 cut(s) 208
BstF5I GGATG 4 cut(s) 553, 622, 820, 858
BstKTI GATC 1 cut(s) 403
BstMBI GATC 1 cut(s) 400
BstMWI GCNNNNNNNGC 2 cut(s) 404, 594
BstNSI RCATGY 1 cut(s) 592
BstPI GGTNACC 1 cut(s) 208
BsuRI GGCC 2 cut(s) 128, 249
BtsCI GGATG 4 cut(s) 553, 622, 820, 858
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 3 cut(s) 47, 454, 485
Cac8I GCNNGC 2 cut(s) 247, 590
Cfr13I GGNCC 1 cut(s) 600
Csp6I GTAC 3 cut(s) 45, 78, 218
CviAII CATG 3 cut(s) 362, 589, 604
CviJI RGCY 7 cut(s) 128, 245, 249, 286, 415, 475, 881
CviKI_1 RGCY 7 cut(s) 128, 245, 249, 286, 415, 475, 881
CviQI GTAC 3 cut(s) 45, 78, 218
DdeI CTNAG 2 cut(s) 169, 519
DpnI GATC 1 cut(s) 402
DpnII GATC 1 cut(s) 400
DrdI GACNNNNNNGTC 1 cut(s) 102
DseDI GACNNNNNNGTC 1 cut(s) 102
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
EciI GGCGGA 2 cut(s) 425, 651
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 600
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 2 cut(s) 437, 509
Eco91I GGTNACC 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 475
EcoO65I GGTNACC 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 3 cut(s) 365, 592, 607
FaiI YATR 6 cut(s) 242, 363, 509, 590, 605, 827
FatI CATG 3 cut(s) 361, 588, 603
FauI CCCGC 1 cut(s) 590
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 4 cut(s) 560, 629, 827, 865
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 1 cut(s) 408
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 128, 249
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 3 cut(s) 365, 592, 607
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 482, 515
HphI GGTGA 1 cut(s) 808
Hpy166II GTNNAC 2 cut(s) 45, 67
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 3 cut(s) 499, 614, 847
Hpy8I GTNNAC 2 cut(s) 45, 67
Hpy99I CGWCG 1 cut(s) 615
HpyAV CCTTC 2 cut(s) 535, 667
HpyCH4III ACNGT 2 cut(s) 217, 449
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 4, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 594
HpyF3I CTNAG 2 cut(s) 169, 519
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 3 cut(s) 365, 592, 607
Kzo9I GATC 1 cut(s) 400
LmnI GCTCC 4 cut(s) 291, 412, 472, 650
LpnPI CCDG 4 cut(s) 231, 389, 455, 484
LweI GCATC 1 cut(s) 538
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 208, 449, 483
MalI GATC 1 cut(s) 402
MbiI CCGCTC 1 cut(s) 653
MboI GATC 1 cut(s) 400
MfeI CAATTG 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 4 cut(s) 32, 56, 422, 832
MlyI GAGTC 1 cut(s) 491
MunI CAATTG 1 cut(s) 422
MwoI GCNNNNNNNGC 2 cut(s) 404, 594
NdeII GATC 1 cut(s) 400
NlaIII CATG 3 cut(s) 365, 592, 607
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 2 cut(s) 449, 483
NspI RCATGY 1 cut(s) 592
PaeI GCATGC 1 cut(s) 592
PfeI GAWTC 1 cut(s) 515
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp124BI GAGCTC 1 cut(s) 477
PspEI GGTNACC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 1 cut(s) 600
RsaI GTAC 3 cut(s) 46, 79, 219
RsaNI GTAC 3 cut(s) 45, 78, 218
SacI GAGCTC 1 cut(s) 477
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 1 cut(s) 400
Sau96I GGNCC 1 cut(s) 600
SchI GAGTC 1 cut(s) 491
SduI GDGCHC 1 cut(s) 477
SetI ASST 9 cut(s) 100, 247, 288, 417, 477, 525, 546, 777, 865
SfaNI GCATC 1 cut(s) 538
SinI GGWCC 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 1 cut(s) 592
Sse9I AATT 4 cut(s) 32, 56, 422, 832
SsiI CCGC 8 cut(s) 206, 383, 407, 410, 597, 636, 653, 734
SspI AATATT 1 cut(s) 259
SstI GAGCTC 1 cut(s) 477
TaaI ACNGT 2 cut(s) 217, 449
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 438
TasI AATT 4 cut(s) 32, 56, 422, 832
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 1 cut(s) 515
TscAI CASTG 3 cut(s) 47, 454, 492
TseFI GTSAC 2 cut(s) 449, 483
Tsp45I GTSAC 2 cut(s) 449, 483
TspDTI ATGAA 3 cut(s) 229, 448, 872
TspRI CASTG 3 cut(s) 47, 454, 492
VpaK11BI GGWCC 1 cut(s) 600
XceI RCATGY 1 cut(s) 592
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.