MD02G1285600.v1.1
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000115
Physical Location & Seq
Forward (+)
34269356 .. 34269892
537 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1285600.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGTGCGTCCTGAACAACTTGGTCAACTTGTGGCTGAGGTTAAGGACATGGGATTCAATCTGAAAAAAACGACTTCAGTGAATGCACTGCGTGCACTGTGTGGTAAGAATAAGTTGGTATGCAATAGATGTCGTGAAGCTTTGAAAAGGTGGGGTTGGTCTGATGACGATATTCTCTCTGCGTTCAAGAAGAATCCGCATTGTATGATTGTGTCTGAGCAGAAGCTAATGCAAGCAATGGATCTTTTAGTGAACAAGATGGGATGGTCCTCAAAAATGATTGCCAAATACCCGGTGGTACTCACTTTGAGTTTGGAGAGGAGACTTATCCCGAGGTGTTCGGTAGTTAAAGTTTTGTTGTTGAAAGGTTTGATGAATGACAACTTGAATTTGGGTTCGGTGCTGAAACCTACGGATAAGCAGTTCTTGGAGATGTTTGTGAAGAGATATCTTGGCAAAGTACCTCGATTGTTGAGTGTGTATCAAGGAAAGGTGAATATCCAGGATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

171

Amino Acids

19.35

Weight (kDa)

9.88

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 43 - 143 3.9e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 249
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 60
AdeI CACNNNGTG 2 cut(s) 92, 101
AfaI GTAC 2 cut(s) 300, 462
AgsI TTSAA 5 cut(s) 58, 145, 187, 364, 388
AjnI CCWGG 1 cut(s) 501
AloI GAACNNNNNNTCC 2 cut(s) 407, 439
AluBI AGCT 2 cut(s) 140, 226
AluI AGCT 2 cut(s) 140, 226
Alw21I GWGCWC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 316
Alw44I GTGCAC 1 cut(s) 93
AlwI GGATC 1 cut(s) 249
Ama87I CYCGRG 1 cut(s) 331
ApaLI GTGCAC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 267
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 505
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 97
BbvCI CCTCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 253, 258
BciT130I CCWGG 1 cut(s) 503
BcnI CCSGG 1 cut(s) 293
BcoDI GTCTC 1 cut(s) 316
Bme1390I CCNGG 2 cut(s) 293, 503
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 293, 503
BmsI GCATC 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 332
BseGI GGATG 2 cut(s) 269, 511
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 2 cut(s) 27, 207
BseRI GAGGAG 1 cut(s) 334
BseSI GKGCMC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 28, 208
BspPI GGATC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 93, 234
BstDEI CTNAG 2 cut(s) 36, 216
BstF5I GGATG 2 cut(s) 269, 511
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 503
BstSCI CCNGG 2 cut(s) 291, 501
BstSLI GKGCMC 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtsCI GGATG 2 cut(s) 269, 511
BtsI GCAGTG 1 cut(s) 86
BtsIMutI CAGTG 3 cut(s) 84, 86, 95
Cac8I GCNNGC 2 cut(s) 93, 234
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 299, 461
CviAII CATG 2 cut(s) 49, 510
CviJI RGCY 3 cut(s) 35, 140, 226
CviKI_1 RGCY 3 cut(s) 35, 140, 226
CviQI GTAC 2 cut(s) 299, 461
DdeI CTNAG 2 cut(s) 36, 216
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
DraIII CACNNNGTG 2 cut(s) 92, 101
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 501
EcoRV GATATC 1 cut(s) 449
EcoT22I ATGCAT 1 cut(s) 511
FaeI CATG 2 cut(s) 52, 513
FaiI YATR 4 cut(s) 50, 121, 206, 511
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FatI CATG 2 cut(s) 48, 509
FokI GGATG 1 cut(s) 276
HapII CCGG 1 cut(s) 293
Hin1II CATG 2 cut(s) 52, 513
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 2 cut(s) 54, 193
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 3 cut(s) 26, 95, 253
Hpy188I TCNGA 3 cut(s) 63, 163, 217
Hpy188III TCNNGA 4 cut(s) 11, 134, 187, 331
Hpy8I GTNNAC 3 cut(s) 26, 95, 253
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 5 cut(s) 86, 95, 123, 232, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 36, 216
Hsp92II CATG 2 cut(s) 52, 513
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 24, 306, 488
LweI GCATC 1 cut(s) 496
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 2 cut(s) 202, 454
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 1 cut(s) 388
MnlI CCTC 5 cut(s) 31, 280, 312, 327, 474
Mph1103I ATGCAT 1 cut(s) 511
MseI TTAA 2 cut(s) 42, 348
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 293, 503
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 1 cut(s) 92
NciI CCSGG 1 cut(s) 293
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 52, 513
NsiI ATGCAT 1 cut(s) 511
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 54, 193
PfoI TCCNGGA 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 2 cut(s) 300, 462
RsaNI GTAC 2 cut(s) 299, 461
SaqAI TTAA 2 cut(s) 42, 348
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 267
ScrFI CCNGG 2 cut(s) 293, 503
SduI GDGCHC 1 cut(s) 97
SetI ASST 9 cut(s) 42, 142, 152, 228, 338, 370, 412, 466, 495
SfaNI GCATC 1 cut(s) 496
SinI GGWCC 1 cut(s) 267
Sse9I AATT 1 cut(s) 388
SsiI CCGC 1 cut(s) 197
StyD4I CCNGG 2 cut(s) 291, 501
TaaI ACNGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 466
TasI AATT 1 cut(s) 388
TfiI GAWTC 2 cut(s) 54, 193
Tru1I TTAA 2 cut(s) 42, 348
Tru9I TTAA 2 cut(s) 42, 348
TscAI CASTG 3 cut(s) 84, 93, 102
TspDTI ATGAA 1 cut(s) 389
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 3 cut(s) 84, 93, 102
VneI GTGCAC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.