RchiOBHm_Chr1g0325501
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
13494234 .. 13494832
599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55522

Sequence Viewer

Length: 429 bp
ATGAATGCATTGTGGTGTAGGAATACGTTTAATCGTAATCGCCAAGTTTATATGATGAGGTGGGGTTGGTCTGAGGATGATTTTCTCTCTGCCTTCAGGAAGTGCCCTCGTAGTATGGTTGTGTCGGAGAAGAAACTAATGCAAGTAATGGATTTTTGGGTGAACAAGATGGGATGGCCTTCAGTAATAATTGCCAAATACGCAATTGTTTGTTCTTATAGTTTGCAGAAGAGAATAATCCCAAGGTGTTCGGTGTTGAAAGTTTTGTTGTCGAAAGGATTGATAAATGAAAACTTGAGTAAGCCGTGTGTGTTAGCTTATGCGGAAGAGCAGTTCTTGGAGATGTTTGTGACAAAATTTGTCAACCAAATACCTCAACTACTGAGTGTGTATCAAGAAAATGTGGATCTCCAGGATGTAACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.72

Weight (kDa)

9.18

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 12 - 113 9e-16 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 414
AcsI RAATTY 1 cut(s) 356
AcuI CTGAAG 2 cut(s) 79, 165
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 1 cut(s) 411
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
AlwI GGATC 1 cut(s) 414
AoxI GGCC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 356
AsuHPI GGTGA 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 107
BccI CCATC 2 cut(s) 163, 168
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 1 cut(s) 413
Bme1390I CCNGG 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 3 cut(s) 82, 179, 421
BseMII CTCAG 2 cut(s) 63, 374
BseSI GKGCMC 1 cut(s) 107
BshFI GGCC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 406
BspACI CCGC 1 cut(s) 323
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 64, 375
BspPI GGATC 1 cut(s) 414
BspQI GCTCTTC 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 413
Bst6I CTCTTC 2 cut(s) 224, 321
BstDEI CTNAG 2 cut(s) 72, 383
BstF5I GGATG 3 cut(s) 82, 179, 421
BstKTI GATC 1 cut(s) 409
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 107
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 3 cut(s) 82, 179, 421
CviJI RGCY 3 cut(s) 178, 304, 317
CviKI_1 RGCY 3 cut(s) 178, 304, 317
DdeI CTNAG 2 cut(s) 72, 383
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 224, 321
EarI CTCTTC 2 cut(s) 224, 321
Eco130I CCWWGG 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 79, 165
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 242
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 242
FaiI YATR 5 cut(s) 51, 53, 116, 219, 321
FokI GGATG 2 cut(s) 89, 186
GsuI CTGGAG 1 cut(s) 395
HaeIII GGCC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 2 cut(s) 163, 364
Hpy188I TCNGA 2 cut(s) 73, 127
Hpy188III TCNNGA 2 cut(s) 97, 395
Hpy8I GTNNAC 2 cut(s) 163, 364
HpyAV CCTTC 2 cut(s) 103, 189
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 8, 142, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 72, 383
HpySE526I ACGT 1 cut(s) 26
Kzo9I GATC 1 cut(s) 406
LguI GCTCTTC 1 cut(s) 321
LpnPI CCDG 3 cut(s) 82, 398, 425
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 349, 418
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 3 cut(s) 142, 241, 338
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 3 cut(s) 189, 204, 356
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 51, 67, 117, 384
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 2 cut(s) 30, 427
MslI CAYNNNNRTG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 413
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 321
PctI GAATGC 1 cut(s) 10
PfoI TCCNGGA 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 30, 427
Sau3AI GATC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 107
SetI ASST 5 cut(s) 29, 62, 248, 319, 376
SmiMI CAYNNNNRTG 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 3 cut(s) 189, 204, 356
SsiI CCGC 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 242
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 272
TasI AATT 3 cut(s) 189, 204, 356
Tru1I TTAA 2 cut(s) 30, 427
Tru9I TTAA 2 cut(s) 30, 427
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 17, 303
XapI RAATTY 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.