RchiOBHm_Chr1g0327651
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
16595210 .. 16595883
674 bp
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UTR
Exon/CDS
Intron
PRQ55715

Sequence Viewer

Length: 468 bp
ATGGGATTTGACCCTCAAAATGTGAGCTTTGTGAAGGCCATTCCCGCATTATCTGGGAAAGAGACGACATGGAAACGATGCCAAGAGGTTTATAAGAGGTGGGGTTGGTCGGAGAATCATATAGGTTCTGCTTTCAGGCTGTCTCCACAGTGTGTGGTTATGTCGGAGAAGAAACTAATCGGAATAATGGAGTTCTTAGTGAACAAGATGGGGTGGCAGTCGCAAACAATTGCGAAATATCCCCATGTTTTGACTTACAGCTTGCAGAAGAGAATCATCACGAGGTTTTCAGTTGTTCGAGTTTTGTTTTTGAAAGGATTGATAGAAGAGGAGATCGTGAGTTTGGCTAATGTGATTTCGAGGTCGGAGGAGTCCTTCTTGGATAGGTTTGTGAACAGATATCTCAGACAAGTACCTCAGTTGTTGGATGTGTACCGTGGAAAAGTGGATATCCAGGATGTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

18.04

Weight (kDa)

9.58

Isoelectric Point (pI)

59.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 18 - 127 3.2e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
AciI CCGC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 152
AfaI GTAC 2 cut(s) 414, 434
AgsI TTSAA 1 cut(s) 313
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 2 cut(s) 27, 261
AluI AGCT 2 cut(s) 27, 261
Alw26I GTCTC 2 cut(s) 56, 147
AoxI GGCC 1 cut(s) 36
BauI CACGAG 1 cut(s) 280
BccI CCATC 1 cut(s) 202
BciT130I CCWGG 1 cut(s) 455
BcoDI GTCTC 2 cut(s) 56, 147
Bme1390I CCNGG 1 cut(s) 455
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 436
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 2 cut(s) 433, 463
BseMII CTCAG 2 cut(s) 418, 431
BseRI GAGGAG 2 cut(s) 344, 383
BshFI GGCC 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 56, 147
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 333
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 2 cut(s) 417, 430
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 1 cut(s) 333
BssSI CACGAG 1 cut(s) 280
Bst2BI CACGAG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 150, 437
Bst6I CTCTTC 2 cut(s) 263, 321
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 3 cut(s) 196, 404, 417
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 2 cut(s) 433, 463
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 2 cut(s) 56, 147
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 2 cut(s) 433, 463
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 413, 433
CviAII CATG 2 cut(s) 69, 245
CviJI RGCY 5 cut(s) 27, 38, 139, 261, 347
CviKI_1 RGCY 5 cut(s) 27, 38, 139, 261, 347
CviQI GTAC 2 cut(s) 413, 433
DdeI CTNAG 3 cut(s) 196, 404, 417
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
DraIII CACNNNGTG 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 263, 321
EarI CTCTTC 2 cut(s) 263, 321
Eco32I GATATC 2 cut(s) 401, 451
EcoRII CCWGG 1 cut(s) 453
EcoRV GATATC 2 cut(s) 401, 451
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 2 cut(s) 72, 248
FaiI YATR 6 cut(s) 70, 93, 120, 122, 161, 246
FatI CATG 2 cut(s) 68, 244
FauI CCCGC 1 cut(s) 52
FokI GGATG 1 cut(s) 440
HaeIII GGCC 1 cut(s) 38
Hin1II CATG 2 cut(s) 72, 248
HinfI GANTC 3 cut(s) 115, 273, 371
Hpy166II GTNNAC 3 cut(s) 202, 394, 433
Hpy188I TCNGA 5 cut(s) 112, 166, 182, 367, 407
Hpy188III TCNNGA 2 cut(s) 280, 337
Hpy8I GTNNAC 3 cut(s) 202, 394, 433
HpyAV CCTTC 2 cut(s) 28, 385
HpyCH4III ACNGT 2 cut(s) 150, 437
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 196, 404, 417
Hsp92II CATG 2 cut(s) 72, 248
Kzo9I GATC 1 cut(s) 333
LpnPI CCDG 3 cut(s) 39, 121, 440
LweI GCATC 1 cut(s) 68
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 3 cut(s) 181, 280, 338
MfeI CAATTG 1 cut(s) 228
MluCI AATT 1 cut(s) 228
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 4 cut(s) 90, 144, 345, 405
MnlI CCTC 8 cut(s) 24, 79, 90, 276, 322, 354, 361, 426
MspR9I CCNGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 1 cut(s) 333
NlaIII CATG 2 cut(s) 72, 248
PfeI GAWTC 2 cut(s) 115, 273
PfoI TCCNGGA 1 cut(s) 453
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PsiI TTATAA 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
RsaI GTAC 2 cut(s) 414, 434
RsaNI GTAC 2 cut(s) 413, 433
Sau3AI GATC 1 cut(s) 333
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 455
SetI ASST 9 cut(s) 29, 90, 101, 127, 263, 287, 365, 389, 418
SfaNI GCATC 1 cut(s) 68
Sse9I AATT 1 cut(s) 228
SsiI CCGC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 150, 437
TaqI TCGA 2 cut(s) 298, 359
TasI AATT 1 cut(s) 228
TfiI GAWTC 2 cut(s) 115, 273
TscAI CASTG 1 cut(s) 155
TspRI CASTG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.