Rh2BG353500
ERF Family

Mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
48470212 .. 48501548
31337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG353500.1

Sequence Viewer

Length: 627 bp
ATGATTTCCCAGGAGAATGTTGTGGCGGTTTTGAAGCGCAAGTCTTGGATGTTCTTGGAGAATCATTCCATGAATGTGATTCCCAATATTGAGGCTTTGAGAGAGAGTTGGCTTGTGAATGAGGTCAAGGAAATGGGATTTGATTTGAAGAAGTCAACTTTTGTTGTTGCACTGAGAGCATTGTGTGGGAAGAGCAGTAGGGCCATATGGAATCGAAATCACGAGATTTACAAGAGGAGTTGGGGTTGGTCTGATGATGATGTTATCTCTGCTTTTAGGAAGAGCCCTCAGTGTATGATTTTGTCTGAGAAGAAGATTATGCAGACAATGGATTTTCTGGTGAATAAGATGGGATGTTCCCTCCGCCGCGACTTCGTCAGGTGCCCCCACAGCCTCCTCCCCCTTGTCGGCGGCCTCAGGCCGCTCAGGAAGAACAGGAGCACCCTCGGACATCAGCATCCGCCGTCGCAGTTCTTGATTAAAGCGTCTCTCGATTCTCACTGTATTCTACTGTTCGTCGCGGTGGTGACGTTCTCGGAGGTGTCTGTGGTGTACTTCAATCAGCCATTGAAGCCAAAGAAGATGAATCACAGAGAGAAGGTTGATGTGAAGGCCAATAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

208

Amino Acids

24.04

Weight (kDa)

9.84

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 381
AccBSI CCGCTC 1 cut(s) 424
AccII CGCG 2 cut(s) 369, 521
AciI CCGC 7 cut(s) 26, 364, 367, 411, 422, 461, 521
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 4 cut(s) 34, 148, 559, 571
AjnI CCWGG 1 cut(s) 9
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 492
AoxI GGCC 4 cut(s) 201, 412, 419, 612
AspLEI GCGC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 352, 538
AxyI CCTNAGG 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 386
BanI GGYRCC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 287
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 443
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 492
BisI GCNGC 3 cut(s) 367, 412, 422
BlsI GCNGC 3 cut(s) 368, 413, 423
Bme1390I CCNGG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 9, 445
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse21I CCTNAGG 1 cut(s) 416
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 2 cut(s) 9, 445
BseGI GGATG 3 cut(s) 54, 359, 457
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 5 cut(s) 164, 297, 302, 430, 439
BseRI GAGGAG 2 cut(s) 250, 386
BseSI GKGCMC 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 369, 521
BshFI GGCC 4 cut(s) 203, 414, 421, 614
BshNI GGYRCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 443
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 492
BsmBI CGTCTC 1 cut(s) 492
BsnI GGCC 4 cut(s) 203, 414, 421, 614
Bsp1286I GDGCHC 3 cut(s) 287, 386, 443
BspACI CCGC 7 cut(s) 26, 364, 367, 411, 422, 461, 521
BspANI GGCC 4 cut(s) 203, 414, 421, 614
BspCNI CTCAG 5 cut(s) 165, 298, 301, 429, 438
BspFNI CGCG 2 cut(s) 369, 521
BspLI GGNNCC 1 cut(s) 383
BspQI GCTCTTC 2 cut(s) 185, 275
BspT107I GGYRCC 1 cut(s) 381
BsrBI CCGCTC 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 9, 445
BssSI CACGAG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 2 cut(s) 503, 513
Bst6I CTCTTC 2 cut(s) 185, 275
BstDEI CTNAG 5 cut(s) 173, 288, 306, 416, 425
BstF5I GGATG 3 cut(s) 54, 359, 457
BstFNI CGCG 2 cut(s) 369, 521
BstHHI GCGC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 492
BstMWI GCNNNNNNNGC 3 cut(s) 176, 390, 571
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 386
BstUI CGCG 2 cut(s) 369, 521
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 4 cut(s) 203, 414, 421, 614
BtsCI GGATG 3 cut(s) 54, 359, 457
BtsIMutI CAGTG 3 cut(s) 170, 296, 499
CfoI GCGC 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 474
Csp6I GTAC 1 cut(s) 553
CviAII CATG 1 cut(s) 70
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 5 cut(s) 173, 288, 306, 416, 425
Eam1104I CTCTTC 2 cut(s) 185, 275
EarI CTCTTC 2 cut(s) 185, 275
EciI GGCGGA 2 cut(s) 353, 450
Eco24I GRGCYC 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 9
EcoT38I GRGCYC 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 492
FaeI CATG 1 cut(s) 73
FaiI YATR 5 cut(s) 71, 206, 208, 296, 320
FatI CATG 1 cut(s) 69
FauNDI CATATG 1 cut(s) 206
Fnu4HI GCNGC 3 cut(s) 367, 412, 422
FokI GGATG 3 cut(s) 61, 366, 444
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 3 cut(s) 367, 412, 422
GlaI GCGC 1 cut(s) 38
GluI GCNGC 3 cut(s) 367, 412, 422
HaeIII GGCC 4 cut(s) 203, 414, 421, 614
HgaI GACGC 1 cut(s) 474
HhaI GCGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 37
HinP1I GCGC 1 cut(s) 37
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 5 cut(s) 61, 79, 211, 494, 586
HphI GGTGA 2 cut(s) 352, 538
Hpy166II GTNNAC 2 cut(s) 156, 553
Hpy188I TCNGA 4 cut(s) 253, 307, 449, 538
Hpy188III TCNNGA 4 cut(s) 221, 427, 475, 491
Hpy8I GTNNAC 2 cut(s) 156, 553
Hpy99I CGWCG 2 cut(s) 469, 521
HpyAV CCTTC 2 cut(s) 592, 604
HpyCH4III ACNGT 2 cut(s) 503, 513
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 2 cut(s) 170, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 390, 571
HpyF3I CTNAG 5 cut(s) 173, 288, 306, 416, 425
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 37
LguI GCTCTTC 2 cut(s) 185, 275
LmnI GCTCC 1 cut(s) 438
LpnPI CCDG 6 cut(s) 23, 323, 364, 403, 412, 421
LweI GCATC 1 cut(s) 466
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 1 cut(s) 526
MbiI CCGCTC 1 cut(s) 424
MboII GAAGA 7 cut(s) 160, 202, 292, 322, 325, 442, 592
MhlI GDGCHC 3 cut(s) 287, 386, 443
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 2 cut(s) 369, 521
MwoI GCNNNNNNNGC 3 cut(s) 176, 390, 571
NdeI CATATG 1 cut(s) 206
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 526
PciSI GCTCTTC 2 cut(s) 185, 275
PfeI GAWTC 5 cut(s) 61, 79, 211, 494, 586
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 368, 413, 423
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 383
PspPI GGNCC 1 cut(s) 201
PsyI GACNNNGTC 1 cut(s) 374
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 74
SapI GCTCTTC 2 cut(s) 185, 275
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 3 cut(s) 367, 412, 422
Sau96I GGNCC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 3 cut(s) 287, 386, 443
SetI ASST 5 cut(s) 126, 383, 533, 543, 603
SfaNI GCATC 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 74
SsiI CCGC 7 cut(s) 26, 364, 367, 411, 422, 461, 521
SspI AATATT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 503, 513
TaiI ACGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 214, 492
TatI WGTACW 1 cut(s) 552
TauI GCSGC 3 cut(s) 369, 414, 424
TfiI GAWTC 5 cut(s) 61, 79, 211, 494, 586
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 3 cut(s) 177, 296, 506
TseFI GTSAC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 2 cut(s) 86, 599
TspRI CASTG 3 cut(s) 177, 296, 506
Tth111I GACNNNGTC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.