Rroxscaffold_2G00111260
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000115
Physical Location & Seq
Forward (+)
35814929 .. 35815531
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111260.1

Sequence Viewer

Length: 534 bp
ATGTCAGGGGTCCCCAATATTTTGAGGCACAATTCGAGAATCTTCTTGCAAGATTTGTCCAAGAATGTGTTGCCAAATATTGGGATTTTGAATGAACTGGGGGTGCCGCAGCGGTGTGTTGCTTTGTTGTTGACTCATTATGCTAATCTTGTGTTGAGAAGACCTGAATTCTTCGGCCAGCTTGTGAGGGAAGTTAGAGAAATAGGATTCGACCCTCGGAAATCGAGCTTTGTGACTGCATTGCGGGCATTGTCTGGGAACGAGGAGACGTTGCATCCACTGTGCATGGCTACATCGGAGAAGAAAATATTGCAAGCAATGGACTTGTTAGTGAACAAGATGGGGTGGCGGGCGGAACAGATTAAGAGCATCATCCCAAGGTGTTCGGTTGTTATAGTTTTGTTTTTGAAAGGATTGGTAAAAGAGGAGAAGTTGAGTTTGTCTACTGTCATTTCGACTCCAGAGAAGTACTTCTTGTATAGGTTTGTAAATAGATATCTCGACCAAGTGCCTCAATTGTTGGATGTGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

177

Amino Acids

20.25

Weight (kDa)

9.51

Isoelectric Point (pI)

55.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccB7I CCANNNNNTGG 1 cut(s) 80
AccI GTMKAC 1 cut(s) 443
AciI CCGC 5 cut(s) 107, 112, 244, 349, 353
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 2 cut(s) 470, 530
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 2 cut(s) 91, 409
AluBI AGCT 2 cut(s) 181, 228
AluI AGCT 2 cut(s) 181, 228
Alw26I GTCTC 1 cut(s) 260
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 470
AspS9I GGNCC 1 cut(s) 10
AvaII GGWCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 2 cut(s) 107, 110
BlsI GCNGC 2 cut(s) 108, 111
BmcAI AGTACT 1 cut(s) 470
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 3 cut(s) 11, 12, 105
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 2 cut(s) 283, 378
BmuI ACTGGG 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 215, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 102
Bse3DI GCAATG 2 cut(s) 239, 324
BseDI CCNNGG 2 cut(s) 215, 377
BseGI GGATG 3 cut(s) 274, 372, 529
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 2 cut(s) 239, 324
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 278, 440
BseXI GCAGC 1 cut(s) 121
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 260
BsmBI CGTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 177
BspACI CCGC 5 cut(s) 107, 112, 244, 349, 353
BspANI GGCC 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 11, 12, 105
BspT107I GGYRCC 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 239, 324
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 215, 377
BssT1I CCWWGG 1 cut(s) 377
Bst4CI ACNGT 2 cut(s) 282, 448
BstC8I GCNNGC 4 cut(s) 179, 246, 315, 351
BstF5I GGATG 3 cut(s) 274, 372, 529
BstMAI GTCTC 1 cut(s) 260
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstV1I GCAGC 1 cut(s) 121
BstV2I GAAGAC 1 cut(s) 166
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 3 cut(s) 274, 372, 529
BtsIMutI CAGTG 1 cut(s) 278
Cac8I GCNNGC 4 cut(s) 179, 246, 315, 351
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 2 cut(s) 469, 529
CviAII CATG 1 cut(s) 286
CviJI RGCY 4 cut(s) 177, 181, 228, 290
CviKI_1 RGCY 4 cut(s) 177, 181, 228, 290
CviQI GTAC 2 cut(s) 469, 529
EaeI YGGCCR 1 cut(s) 175
EciI GGCGGA 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 377
Eco32I GATATC 1 cut(s) 497
Eco47I GGWCC 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 167
EcoRV GATATC 1 cut(s) 497
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 141, 287, 395, 480
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FatI CATG 1 cut(s) 285
FauI CCCGC 2 cut(s) 237, 342
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 2 cut(s) 107, 110
FokI GGATG 2 cut(s) 261, 359
Fsp4HI GCNGC 2 cut(s) 107, 110
GluI GCNGC 2 cut(s) 107, 110
GsuI CTGGAG 1 cut(s) 444
HaeIII GGCC 1 cut(s) 177
Hin1II CATG 1 cut(s) 289
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HinfI GANTC 4 cut(s) 39, 133, 207, 457
Hpy166II GTNNAC 4 cut(s) 132, 334, 444, 529
Hpy188I TCNGA 2 cut(s) 219, 298
Hpy188III TCNNGA 3 cut(s) 36, 461, 500
Hpy8I GTNNAC 4 cut(s) 132, 334, 444, 529
HpyCH4III ACNGT 2 cut(s) 282, 448
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 49, 239, 274, 285, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 1 cut(s) 289
KflI GGGWCCC 1 cut(s) 10
LpnPI CCDG 5 cut(s) 83, 177, 191, 240, 474
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 2 cut(s) 283, 378
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 4 cut(s) 34, 163, 171, 313
MfeI CAATTG 1 cut(s) 515
MluCI AATT 3 cut(s) 31, 167, 515
MlyI GAGTC 2 cut(s) 127, 451
MmeI TCCRAC 1 cut(s) 501
MnlI CCTC 6 cut(s) 18, 180, 225, 256, 418, 522
MroXI GAANNNNTTC 1 cut(s) 470
MseI TTAA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 112
MunI CAATTG 1 cut(s) 515
MwoI GCNNNNNNNGC 1 cut(s) 245
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 3 cut(s) 11, 12, 105
NmuCI GTSAC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 470
PfeI GAWTC 2 cut(s) 39, 207
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 2 cut(s) 108, 111
PleI GAGTC 2 cut(s) 127, 451
PpsI GAGTC 2 cut(s) 127, 451
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
PspN4I GGNNCC 3 cut(s) 11, 12, 105
PspPI GGNCC 1 cut(s) 10
PspPPI RGGWCCY 1 cut(s) 10
RsaI GTAC 2 cut(s) 470, 530
RsaNI GTAC 2 cut(s) 469, 529
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 2 cut(s) 107, 110
Sau96I GGNCC 1 cut(s) 10
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 2 cut(s) 127, 451
SetI ASST 6 cut(s) 166, 183, 230, 272, 383, 485
SfaNI GCATC 2 cut(s) 283, 378
SinI GGWCC 1 cut(s) 10
Sse9I AATT 3 cut(s) 31, 167, 515
SsiI CCGC 5 cut(s) 107, 112, 244, 349, 353
SspI AATATT 3 cut(s) 19, 79, 309
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 2 cut(s) 282, 448
TaiI ACGT 1 cut(s) 272
TaqI TCGA 5 cut(s) 35, 210, 224, 455, 501
TasI AATT 3 cut(s) 31, 167, 515
TatI WGTACW 2 cut(s) 468, 528
TauI GCSGC 1 cut(s) 109
TfiI GAWTC 2 cut(s) 39, 207
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 108
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 470
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.