MD02G1281900.v1.1
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000115
Physical Location & Seq
Reverse (-)
33757558 .. 33758037
480 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1281900.v1.1.491

Sequence Viewer

Length: 480 bp
ATGATTTCGGGGGGAAAAATTGCTTCAGTTTTCAGGCACTGCACGCGGATTTTCTTGGAAGGCCACTCTAAGAATGTTGAGCCAAATATTGGGATCTTAAGAGAATCAGGTATGCCCCAATCATGTATTTCTCTGATGGTAGCTCATTTTACCCTTGCTTTGATGCAAAACCGTAAAAAGTTTGCTCAAGTTGTGGGTGAGGTTAAGCAAATGGGTTTTGATATGGAAAAATCAATGTCTGTGATGGCTATAAAAGCTTTGAGTAGTGCCAATAGTAAGTCCATATGGACTCGAAATTGCGAAGTTTATAAGAGGTGGGGTTGGTCTGAGGATGATGTTCTCTCTGCTTTCAAGCGGCACCCAGTTTGTATGACCAGGTCGGAGAAGAAGATAATGCAAGTCATGGAATTTGTAGTGAACAAGATGGGATTGTCTTCGCAAATGATTGTCAAAGCCCCGGTGATCATGGGTTACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

9.73

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 23 - 159 3.3e-12 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 309
AccB1I GGYRCC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 89
AccII CGCG 1 cut(s) 46
AciI CCGC 2 cut(s) 46, 355
AclWI GGATC 1 cut(s) 101
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 89
AflII CTTAAG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 352
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 2 cut(s) 143, 257
AluI AGCT 2 cut(s) 143, 257
AlwI GGATC 1 cut(s) 101
AlwNI CAGNNNCTG 1 cut(s) 39
AoxI GGCC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 458
AsuHPI GGTGA 2 cut(s) 209, 472
BanI GGYRCC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 426
BccI CCATC 3 cut(s) 130, 238, 418
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 462
BcnI CCSGG 1 cut(s) 458
BfrI CTTAAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 356
BlsI GCNGC 1 cut(s) 357
Bme1390I CCNGG 2 cut(s) 376, 458
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 376, 458
BmrI ACTGGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 153
BmuI ACTGGG 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 456
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 362
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 46
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 1 cut(s) 357
BsiSI CCGG 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 89
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 2 cut(s) 93, 462
BspACI CCGC 2 cut(s) 46, 355
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 359
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 357
BspTI CTTAAG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 2 cut(s) 93, 462
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 173, 476
BstAFI CTTAAG 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 69, 327
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 1 cut(s) 46
BstKTI GATC 2 cut(s) 96, 465
BstMBI GATC 2 cut(s) 93, 462
BstMWI GCNNNNNNNGC 2 cut(s) 43, 254
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 374, 456
BstUI CGCG 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 44
CaiI CAGNNNCTG 1 cut(s) 39
CsiI ACCWGGT 1 cut(s) 374
CviAII CATG 3 cut(s) 123, 403, 466
CviJI RGCY 6 cut(s) 63, 82, 143, 248, 257, 455
CviKI_1 RGCY 6 cut(s) 63, 82, 143, 248, 257, 455
DdeI CTNAG 2 cut(s) 69, 327
DpnI GATC 2 cut(s) 95, 464
DpnII GATC 2 cut(s) 93, 462
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 374
FaeI CATG 3 cut(s) 126, 406, 469
FatI CATG 3 cut(s) 122, 402, 465
FauNDI CATATG 1 cut(s) 284
FbaI TGATCA 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 356
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 356
GluI GCNGC 1 cut(s) 356
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 458
Hin1II CATG 3 cut(s) 126, 406, 469
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 2 cut(s) 104, 289
HpaII CCGG 1 cut(s) 458
HphI GGTGA 2 cut(s) 209, 472
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 3 cut(s) 135, 328, 382
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 2 cut(s) 173, 476
HpyCH4V TGCA 3 cut(s) 42, 166, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 254
HpyF3I CTNAG 2 cut(s) 69, 327
Hsp92II CATG 3 cut(s) 126, 406, 469
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 2 cut(s) 93, 462
LpnPI CCDG 6 cut(s) 19, 93, 361, 375, 388, 471
LweI GCATC 1 cut(s) 153
MabI ACCWGGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 470
MalI GATC 2 cut(s) 95, 464
MboI GATC 2 cut(s) 93, 462
MboII GAAGA 3 cut(s) 397, 400, 426
MflI RGATCY 1 cut(s) 93
MluCI AATT 3 cut(s) 18, 295, 407
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 360
MnlI CCTC 3 cut(s) 193, 306, 322
MseI TTAA 2 cut(s) 98, 204
MspCI CTTAAG 1 cut(s) 97
MspI CCGG 1 cut(s) 458
MspR9I CCNGG 2 cut(s) 376, 458
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 46
MwoI GCNNNNNNNGC 2 cut(s) 43, 254
NciI CCSGG 1 cut(s) 458
NdeI CATATG 1 cut(s) 284
NdeII GATC 2 cut(s) 93, 462
NlaIII CATG 3 cut(s) 126, 406, 469
NlaIV GGNNCC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 376
PflMI CCANNNNNTGG 1 cut(s) 89
PkrI GCNGC 1 cut(s) 357
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PsiI TTATAA 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 39
PsuI RGATCY 1 cut(s) 93
PsyI GACNNNGTC 1 cut(s) 376
SaqAI TTAA 2 cut(s) 98, 204
SatI GCNGC 1 cut(s) 356
Sau3AI GATC 2 cut(s) 93, 462
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 376, 458
SetI ASST 6 cut(s) 112, 145, 204, 259, 317, 380
SexAI ACCWGGT 1 cut(s) 374
SfaNI GCATC 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 97, 186
SmoI CTYRAG 2 cut(s) 97, 186
Sse9I AATT 3 cut(s) 18, 295, 407
SsiI CCGC 2 cut(s) 46, 355
SspI AATATT 1 cut(s) 88
StyD4I CCNGG 2 cut(s) 374, 456
TaaI ACNGT 2 cut(s) 173, 476
TaqI TCGA 1 cut(s) 292
TasI AATT 3 cut(s) 18, 295, 407
TauI GCSGC 1 cut(s) 358
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 98, 204
Tru9I TTAA 2 cut(s) 98, 204
TscAI CASTG 1 cut(s) 44
TspRI CASTG 1 cut(s) 44
Tth111I GACNNNGTC 1 cut(s) 376
Van91I CCANNNNNTGG 1 cut(s) 89
Vha464I CTTAAG 1 cut(s) 97
XapI RAATTY 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.