RLG00000015894

Calmodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000115
Physical Location & Seq
Reverse (-)
2152278 .. 2152946
669 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015894

Sequence Viewer

Length: 669 bp
ATGGTGTTCACCACCTTATTGTTGCTGGTAGTTCTATTTCTTGCTGCCTTCTTTATATATTTCCCCAACCGCAAGCTTCTTGCATGGTTTCAGTCTTTCTTTCCAGTCGAAACGGCTTCTGATTCGACTGCAACGAAGAAAGAAGTCGTGAAGAATGTTAGGTCAGTGATAACAACAAGAAGGGAGGACGATCCAGAGCTGAAGCGAGTGTTTGCCACCTTTGACAAGAACAGTGATGGGTTTATAACCAAGCAGGAGCTGAAGGAGTCGCTGAAGAATATCAGGGTCTTCATGAGTGATGAGGAAGTCGAAGAAATGGTGAACAAAGTGGACGCAAACGGAGACGGGCTGATCGATTTTTCCGAGTTCTGTTTGCTCTGCCAGGGTCAGTCTATTGTTAATGGAGGAGAAGATGGGAATGAAGCTGGTGAGGTGGACCAAGAGGAGGAACTGAGGGAGGCTTTTGGTGTGTTCGACAAGGATAAAGATGGGTTGATTTCTGTGGAGGAATTGGGGGTGGTTTTGTGCTCTTTGGGTTTGAGAGAAGGGAATAGAGTTGAGGCTTGTAAGGAAATGGTGAAGAAGGTTGATAAGGATGGAGATGGTATGGTTAATTTTGATGAGTTCAAGATGATGATGAAAGGTGGGAGGCTTCTCACAGCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5

Protein Analysis

223

Amino Acids

25.02

Weight (kDa)

4.6

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 66 - 93 4.4e-07 EF hand domain
EF-hand_7 PF13499 66 - 127 2.9e-16 EF-hand domain pair
EF-hand_6 PF13405 66 - 93 1.8e-06 EF-hand domain
EF-hand_8 PF13833 78 - 125 1.4e-06 EF-hand domain pair
EF-hand_1 PF00036 102 - 128 1.8e-06 EF hand domain
EF-hand_7 PF13499 148 - 214 1.6e-13 EF-hand domain pair
EF-hand_1 PF00036 150 - 175 1.6e-06 EF hand domain
EF-hand_6 PF13405 150 - 179 4.2e-07 EF-hand domain
EF-hand_1 PF00036 189 - 214 6.9e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 185
AcuI CTGAAG 3 cut(s) 221, 281, 293
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 1 cut(s) 628
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 4 cut(s) 76, 199, 259, 425
AluI AGCT 4 cut(s) 76, 199, 259, 425
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 3 cut(s) 331, 440, 589
AvaII GGWCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 1 cut(s) 31
BccI CCATC 5 cut(s) 230, 407, 482, 590, 596
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 336
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmrFI CCNGG 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 280
Bsa29I ATCGAT 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 2 cut(s) 420, 458
BseXI GCAGC 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 1 cut(s) 336
BsmBI CGTCTC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 190, 351
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 444
BspDI ATCGAT 1 cut(s) 354
BspHI TCATGA 1 cut(s) 291
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 2 cut(s) 190, 351
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 601
BstKTI GATC 2 cut(s) 193, 354
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 2 cut(s) 190, 351
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 280
Bsu15I ATCGAT 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 354
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 2 cut(s) 171, 238
Cac8I GCNNGC 1 cut(s) 74
CaiI CAGNNNCTG 1 cut(s) 259
CciI TCATGA 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 436
ClaI ATCGAT 1 cut(s) 354
CseI GACGC 1 cut(s) 341
CviAII CATG 2 cut(s) 84, 292
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 192, 353
DpnII GATC 2 cut(s) 190, 351
Eco47I GGWCC 1 cut(s) 436
Eco57I CTGAAG 3 cut(s) 221, 281, 293
EcoRII CCWGG 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 2 cut(s) 87, 295
FaiI YATR 6 cut(s) 56, 58, 85, 245, 293, 608
FatI CATG 2 cut(s) 83, 291
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HgaI GACGC 1 cut(s) 341
Hin1II CATG 2 cut(s) 87, 295
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 122, 266
HphI GGTGA 3 cut(s) 331, 440, 589
Hpy166II GTNNAC 4 cut(s) 9, 322, 331, 436
Hpy188I TCNGA 2 cut(s) 121, 364
Hpy188III TCNNGA 4 cut(s) 148, 194, 292, 628
Hpy8I GTNNAC 4 cut(s) 9, 322, 331, 436
HpyAV CCTTC 5 cut(s) 58, 174, 256, 539, 577
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 83, 131
HpyF3I CTNAG 1 cut(s) 452
Hsp92II CATG 2 cut(s) 87, 295
Kzo9I GATC 2 cut(s) 190, 351
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 8 cut(s) 11, 117, 207, 239, 268, 368, 395, 411
Lsp1109I GCAGC 1 cut(s) 31
MalI GATC 2 cut(s) 192, 353
MboI GATC 2 cut(s) 190, 351
MboII GAAGA 7 cut(s) 148, 163, 280, 286, 323, 422, 592
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 2 cut(s) 509, 613
MlyI GAGTC 1 cut(s) 275
MseI TTAA 2 cut(s) 399, 612
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
NdeII GATC 2 cut(s) 190, 351
NlaIII CATG 2 cut(s) 87, 295
PagI TCATGA 1 cut(s) 291
PcsI WCGNNNNNNNCGW 3 cut(s) 131, 351, 360
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PsiI TTATAA 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspPI GGNCC 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 259
SaqAI TTAA 2 cut(s) 399, 612
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 190, 351
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 1 cut(s) 530
SinI GGWCC 1 cut(s) 436
Sse9I AATT 2 cut(s) 509, 613
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 5 cut(s) 108, 125, 309, 354, 474
TasI AATT 2 cut(s) 509, 613
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 399, 612
Tru9I TTAA 2 cut(s) 399, 612
TscAI CASTG 2 cut(s) 171, 238
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 280, 435, 653
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 2 cut(s) 171, 238
VpaK11BI GGWCC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.