Rh1AG086200
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000115
Physical Location & Seq
Forward (+)
14780435 .. 14780860
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG086200.1

Sequence Viewer

Length: 426 bp
ATGGAGGGATTTGCTTCACATTTGGGTAGAAGACTCATCAGCAACACCGAAATCCCAGCCGGCCAAGACGATTCTACATTCTCCTACCTGGTTAACTCGTGTGGGCTTTCCCCAGAAGCCGCCATTGTAGCATCCCACAAGGTAAAGCTTCGATCTTTGGTGAAATCAGACTCCGTTTTAGCGCTTTTGAAACACTATGAATTATCAGATGCCCATATCTCAAAGGTTGTGCGGATACACCCACGTGTTCTGGTGGCAAATGCCCAGGAAACCCTTTTGCCAAAGCTCGAGTTTTTGTGCTCCATAGGAATGTCAAGGCTCGACCTTGCAGAAACACTGACCTACAACCCACTTGTTTTGACGCGAAGCTTGAAAAACTGCATTGCCCCAGTCCTGTATTGCTCAGTTGCTAACATCTTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

141

Amino Acids

15.4

Weight (kDa)

8.31

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 60 - 126 5.9e-09 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 364
AciI CCGC 2 cut(s) 120, 232
AcoI YGGCCR 1 cut(s) 61
AcvI CACGTG 1 cut(s) 245
AfeI AGCGCT 1 cut(s) 183
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 2 cut(s) 190, 373
AjnI CCWGG 2 cut(s) 87, 264
AleI CACNNNNGTG 1 cut(s) 243
AluBI AGCT 3 cut(s) 148, 286, 369
AluI AGCT 3 cut(s) 148, 286, 369
Alw21I GWGCWC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 287
Aor51HI AGCGCT 1 cut(s) 183
AoxI GGCC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 287
BauI CACGAG 1 cut(s) 97
BbrPI CACGTG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 89, 266
BciVI GTATCC 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 185
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 89, 266
BmeT110I CYCGRG 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 89, 266
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 140, 199
BmuI ACTGGG 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 37
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 264
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 2 cut(s) 89, 266
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 389
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 302
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 60
BsnI GGCC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 152
BspACI CCGC 2 cut(s) 120, 232
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 416
BspFNI CGCG 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 97
Bst2UI CCWGG 2 cut(s) 89, 266
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 403
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 89, 266
BstSCI CCNGG 2 cut(s) 87, 264
BstUI CGCG 1 cut(s) 364
BstV2I GAAGAC 1 cut(s) 37
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 59
CseI GACGC 1 cut(s) 370
CsiI ACCWGGT 1 cut(s) 87
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviJI RGCY 8 cut(s) 59, 63, 106, 119, 148, 286, 319, 369
CviKI_1 RGCY 8 cut(s) 59, 63, 106, 119, 148, 286, 319, 369
DdeI CTNAG 1 cut(s) 403
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 61
Eco47III AGCGCT 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 245
Eco88I CYCGRG 1 cut(s) 287
EcoRII CCWGG 2 cut(s) 87, 264
FaiI YATR 4 cut(s) 198, 216, 305, 421
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 183
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 370
HhaI GCGC 1 cut(s) 184
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 146, 367
HinfI GANTC 3 cut(s) 33, 71, 170
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 169, 208
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 329, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 403
HpySE526I ACGT 1 cut(s) 244
HspAI GCGC 1 cut(s) 182
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 305
LweI GCATC 2 cut(s) 140, 199
MabI ACCWGGT 1 cut(s) 87
MaeII ACGT 1 cut(s) 244
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 1 cut(s) 200
MlyI GAGTC 2 cut(s) 27, 164
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 2 cut(s) 243, 308
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 89, 266
MvaI CCWGG 2 cut(s) 89, 266
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 1 cut(s) 152
NgoMIV GCCGGC 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 287
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 27, 164
PmaCI CACGTG 1 cut(s) 245
PmlI CACGTG 1 cut(s) 245
PpsI GAGTC 2 cut(s) 27, 164
Ppu21I YACGTR 1 cut(s) 245
Psp6I CCWGG 2 cut(s) 87, 264
PspCI CACGTG 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 87, 264
PspXI VCTCGAGB 1 cut(s) 287
RseI CAYNNNNRTG 2 cut(s) 243, 308
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 152
SchI GAGTC 2 cut(s) 27, 164
ScrFI CCNGG 2 cut(s) 89, 266
SduI GDGCHC 1 cut(s) 302
SetI ASST 9 cut(s) 90, 144, 150, 228, 247, 288, 327, 344, 371
SexAI ACCWGGT 1 cut(s) 87
SfaNI GCATC 2 cut(s) 140, 199
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 2 cut(s) 243, 308
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 1 cut(s) 200
SsiI CCGC 2 cut(s) 120, 232
StyD4I CCNGG 2 cut(s) 87, 264
TaiI ACGT 1 cut(s) 247
TaqI TCGA 3 cut(s) 151, 288, 321
TasI AATT 1 cut(s) 200
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 342
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 342
XhoI CTCGAG 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.