Rmu_sc0006405.1_g000010
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006405.1
OG0000115
Physical Location & Seq
Forward (+)
27185 .. 30271
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006405.1_g000010.1.cds

Sequence Viewer

Length: 786 bp
atggcttatttgccctcacacccaagagtcattttagctgatgctgagaaaaccctttcacccgagattgagtttttcagctctgttgggctctcaagggtggaccttgctagagttcttagttttaatccacatctgttgtcaagaagcttggagaatcagattgtgccctcttataatttcctcaggaatatgatttcccaggagaatgttgtggcggttttgaagcgcaagtcttggatgttcttggagaatcattccatgaatgtgattcccaatattgaggctttgagagagagttggcttgtgaatgaggtcaaggaaatgggatttgatttgaagaagtcaacttttgttgttgcactgagagcattgtgtgggaagagcactctcccttcgccggcgtctatcttcctcttccggccacctctgagcaagcaaccacgtccagaagcttcgcctcactcctctgatgccctccggccaccaaaacttccaatccttggctctgtgaactcacctcaaccttctgatcatcataccagaaggatcgcacctggggtgaccggattcacgttcgtcggagctcgaccggtaattttcgaccacttccgttcattttcagccttcatactagttaggaaaattgttgggattgatgagatgaagaggaacagcccggacacgacaccattggcggtggtcggcggcggctctgtccaaactccggcgtcccttttccggccacctccgggggtcaaaaatgtgatttctttacatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

261

Amino Acids

28.92

Weight (kDa)

10.11

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 503
AciI CCGC 4 cut(s) 218, 698, 708, 711
AclWI GGATC 1 cut(s) 557
AcoI YGGCCR 3 cut(s) 422, 482, 743
AcyI GRCGYC 2 cut(s) 404, 731
AfiI CCNNNNNNNGG 5 cut(s) 400, 503, 727, 741, 752
AgeI ACCGGT 1 cut(s) 592
AgsI TTSAA 2 cut(s) 226, 340
AhlI ACTAGT 1 cut(s) 634
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 2 cut(s) 201, 556
AluBI AGCT 5 cut(s) 38, 81, 150, 455, 587
AluI AGCT 5 cut(s) 38, 81, 150, 455, 587
Alw21I GWGCWC 2 cut(s) 389, 589
AlwI GGATC 1 cut(s) 557
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 3 cut(s) 422, 482, 743
AsiGI ACCGGT 1 cut(s) 592
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 2 cut(s) 680, 753
AsuHPI GGTGA 3 cut(s) 51, 510, 574
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 103
AxyI CCTNAGG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 171
BanII GRGCYC 2 cut(s) 93, 589
Bbv12I GWGCWC 2 cut(s) 389, 589
BciT130I CCWGG 2 cut(s) 203, 558
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 2 cut(s) 680, 753
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 2 cut(s) 111, 635
BisI GCNGC 2 cut(s) 709, 712
BlsI GCNGC 2 cut(s) 710, 713
Bme1390I CCNGG 4 cut(s) 203, 558, 680, 753
Bme18I GGWCC 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 62
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 103
BmrFI CCNGG 4 cut(s) 203, 558, 680, 753
BmsI GCATC 2 cut(s) 31, 463
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 680, 753
BsaHI GRCGYC 2 cut(s) 404, 731
BsaJI CCNNGG 4 cut(s) 201, 502, 557, 752
BsaWI WCCGGW 2 cut(s) 566, 592
Bsc4I CCNNNNNNNGG 5 cut(s) 400, 503, 727, 741, 752
Bse118I RCCGGY 2 cut(s) 400, 592
Bse21I CCTNAGG 1 cut(s) 185
BseBI CCWGG 2 cut(s) 203, 558
BseDI CCNNGG 4 cut(s) 201, 502, 557, 752
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 5 cut(s) 400, 503, 727, 741, 752
BseMII CTCAG 4 cut(s) 36, 199, 356, 422
BseRI GAGGAG 1 cut(s) 457
BseSI GKGCMC 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 593
BshFI GGCC 3 cut(s) 424, 484, 745
BshTI ACCGGT 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 593
BsiHKAI GWGCWC 2 cut(s) 389, 589
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 9 cut(s) 401, 421, 481, 567, 593, 680, 728, 742, 752
BslFI GGGAC 1 cut(s) 718
BslI CCNNNNNNNGG 5 cut(s) 400, 503, 727, 741, 752
BsmFI GGGAC 1 cut(s) 718
BsnI GGCC 3 cut(s) 424, 484, 745
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 4 cut(s) 93, 171, 389, 589
Bsp143I GATC 2 cut(s) 532, 549
BspACI CCGC 4 cut(s) 218, 698, 708, 711
BspANI GGCC 3 cut(s) 424, 484, 745
BspCNI CTCAG 4 cut(s) 37, 198, 357, 423
BspPI GGATC 1 cut(s) 557
BspQI GCTCTTC 1 cut(s) 377
BsrFI RCCGGY 2 cut(s) 400, 592
BssAI RCCGGY 2 cut(s) 400, 592
BssECI CCNNGG 4 cut(s) 201, 502, 557, 752
BssMI GATC 2 cut(s) 532, 549
BssNI GRCGYC 2 cut(s) 404, 731
BssT1I CCWWGG 1 cut(s) 502
Bst2UI CCWGG 2 cut(s) 203, 558
Bst6I CTCTTC 3 cut(s) 377, 422, 662
BstACI GRCGYC 2 cut(s) 404, 731
BstC8I GCNNGC 2 cut(s) 402, 437
BstDEI CTNAG 5 cut(s) 45, 119, 185, 365, 431
BstEII GGTNACC 1 cut(s) 562
BstF5I GGATG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 535, 552
BstMBI GATC 2 cut(s) 532, 549
BstMCI CGRYCG 1 cut(s) 593
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 2 cut(s) 203, 558
BstPI GGTNACC 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 201, 556, 678, 751
BstSLI GKGCMC 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 185
BsuRI GGCC 3 cut(s) 424, 484, 745
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 2 cut(s) 402, 437
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 2 cut(s) 400, 592
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 2 cut(s) 393, 720
CspAI ACCGGT 1 cut(s) 592
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviAII CATG 1 cut(s) 262
DdeI CTNAG 5 cut(s) 45, 119, 185, 365, 431
DpnI GATC 2 cut(s) 534, 551
DpnII GATC 2 cut(s) 532, 549
EaeI YGGCCR 3 cut(s) 422, 482, 743
Eam1104I CTCTTC 3 cut(s) 377, 422, 662
EarI CTCTTC 3 cut(s) 377, 422, 662
Ecl136II GAGCTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 502
Eco24I GRGCYC 2 cut(s) 93, 589
Eco47I GGWCC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 587
Eco81I CCTNAGG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 562
EcoICRI GAGCTC 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 201, 556
EcoT14I CCWWGG 1 cut(s) 502
EcoT38I GRGCYC 2 cut(s) 93, 589
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 1 cut(s) 265
FaiI YATR 5 cut(s) 177, 194, 263, 540, 632
FaqI GGGAC 1 cut(s) 718
FatI CATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 532
Fnu4HI GCNGC 2 cut(s) 709, 712
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 2 cut(s) 93, 589
Fsp4HI GCNGC 2 cut(s) 709, 712
FspBI CTAG 2 cut(s) 111, 635
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 709, 712
HaeIII GGCC 3 cut(s) 424, 484, 745
HapII CCGG 9 cut(s) 401, 421, 481, 567, 593, 680, 728, 742, 752
HgaI GACGC 2 cut(s) 393, 720
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 2 cut(s) 404, 731
Hin1II CATG 1 cut(s) 265
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 2 cut(s) 148, 453
HinfI GANTC 5 cut(s) 27, 157, 253, 271, 570
HpaII CCGG 9 cut(s) 401, 421, 481, 567, 593, 680, 728, 742, 752
HphI GGTGA 3 cut(s) 51, 510, 574
Hpy166II GTNNAC 3 cut(s) 103, 348, 514
Hpy188I TCNGA 5 cut(s) 162, 432, 472, 532, 584
Hpy188III TCNNGA 3 cut(s) 144, 187, 449
Hpy8I GTNNAC 3 cut(s) 103, 348, 514
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 4 cut(s) 405, 537, 540, 637
HpyCH4IV ACGT 2 cut(s) 445, 575
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 5 cut(s) 45, 119, 185, 365, 431
HpySE526I ACGT 2 cut(s) 445, 575
Hsp92I GRCGYC 2 cut(s) 404, 731
Hsp92II CATG 1 cut(s) 265
HspAI GCGC 1 cut(s) 229
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 2 cut(s) 532, 549
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 1 cut(s) 584
LweI GCATC 2 cut(s) 31, 463
MaeI CTAG 2 cut(s) 111, 635
MaeII ACGT 2 cut(s) 445, 575
MaeIII GTNAC 1 cut(s) 562
MalI GATC 2 cut(s) 534, 551
MboI GATC 2 cut(s) 532, 549
MboII GAAGA 5 cut(s) 352, 394, 403, 409, 679
MhlI GDGCHC 4 cut(s) 93, 171, 389, 589
MluCI AATT 3 cut(s) 178, 597, 645
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 562
MreI CGCCGGCG 1 cut(s) 400
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 9 cut(s) 401, 421, 481, 567, 593, 680, 728, 742, 752
MspR9I CCNGG 4 cut(s) 203, 558, 680, 753
MvaI CCWGG 2 cut(s) 203, 558
MwoI GCNNNNNNNGC 1 cut(s) 368
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 2 cut(s) 680, 753
NdeII GATC 2 cut(s) 532, 549
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 377
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 4 cut(s) 157, 253, 271, 570
PflMI CCANNNNNTGG 1 cut(s) 503
PinAI ACCGGT 1 cut(s) 592
PkrI GCNGC 2 cut(s) 710, 713
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 589
Psp6I CCWGG 2 cut(s) 201, 556
PspEI GGTNACC 1 cut(s) 562
PspGI CCWGG 2 cut(s) 201, 556
PspPI GGNCC 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 589
SapI GCTCTTC 1 cut(s) 377
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 709, 712
Sau3AI GATC 2 cut(s) 532, 549
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 4 cut(s) 203, 558, 680, 753
SduI GDGCHC 4 cut(s) 93, 171, 389, 589
SfaNI GCATC 2 cut(s) 31, 463
SgrAI CRCCGGYG 1 cut(s) 400
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
SpeI ACTAGT 1 cut(s) 634
Sse9I AATT 3 cut(s) 178, 597, 645
SsiI CCGC 4 cut(s) 218, 698, 708, 711
SspI AATATT 1 cut(s) 280
SspMI CTAG 2 cut(s) 111, 635
SstI GAGCTC 1 cut(s) 589
StyD4I CCNGG 4 cut(s) 201, 556, 678, 751
StyI CCWWGG 1 cut(s) 502
TaiI ACGT 2 cut(s) 448, 578
TaqI TCGA 2 cut(s) 589, 603
TasI AATT 3 cut(s) 178, 597, 645
TauI GCSGC 2 cut(s) 711, 714
TfiI GAWTC 4 cut(s) 157, 253, 271, 570
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 562
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 4 cut(s) 278, 606, 619, 680
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 103
XspI CTAG 2 cut(s) 111, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.