Rh1BG068800
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
10471491 .. 10473149
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG068800.1

Sequence Viewer

Length: 810 bp
ATGGAGGGATTTGCTTCACATTTGGGTAGAAGACTCATCAGCAACACCGAAATCCCAGCCGGCCAAGACGATTCTACAGTCTCCTACCTGGTTAACTCATGTGGGCTTTCCCCAGAAGCCGCCATTGTAGCATCCCACAAGGTTGTGCGGATACACCCACATGTTCTGGTGGCAAATGCCCAGGAAACCATTTTGCCAAAGCTCGAGTTTTTGAGCTCCATAGGAATGTCAAAGCTCGACCTTGCAAAAACACTGACCTACAACCCAATGGTTTTGACGCGAAGCTTGAGAAACTGCATTATACCCTGTTATACCTTCCTCAAAAGCGTGGTGCTATCTGATTTCAAGGTCGTCAATATTTGGAAGCGCCACCCACAGATTTTCGGGGCAATTCTATCCAAGAATGTGATACCCAATATGGGGCTTCTGAGAGAATTGGGCATGCCCCAGTCCTGTATTGCCCAGTTGCTAACATCTCATGCTGATGTTGTGATGAGAAAGCTTGAATTCTTCAGTCAACTTGTGGGTGAGGTCAAAGAAATGGGATTTGACCCTCAAAATGCTGTCTCCATAGTGTATGGTTATGTTAGAGAAGAAACTAATGGGAATAATGGAGTTCTTAGTGAACAAGATGGGGTGGCAGTCGCAAACAATTGCGAAATATCCCCATGTTTTGACTTACAGCTTGCAGAAGAGAATCATCCCGAGGTTTTCAATCGTTCGAGTTTTGTTTTTGAAAGGATTGATAGAAGAGGAGAACGTGGGTTTGGCTACTGTGATTTCGAGGTCGGAGGAGTCCTTCTTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

269

Amino Acids

29.75

Weight (kDa)

5.82

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 47 - 192 1.3e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 280
AciI CCGC 2 cut(s) 120, 148
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 419, 420
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 4 cut(s) 346, 506, 715, 737
AjnI CCWGG 2 cut(s) 87, 180
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AluBI AGCT 6 cut(s) 202, 216, 235, 285, 502, 685
AluI AGCT 6 cut(s) 202, 216, 235, 285, 502, 685
Alw21I GWGCWC 1 cut(s) 218
Alw26I GTCTC 2 cut(s) 85, 571
Ama87I CYCGRG 2 cut(s) 203, 704
AoxI GGCC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 506
AspLEI GCGC 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 539
AvaI CYCGRG 2 cut(s) 203, 704
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 218
BccI CCATC 1 cut(s) 626
BciT130I CCWGG 2 cut(s) 89, 182
BciVI GTATCC 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 85, 571
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 370
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 89, 182
BmeT110I CYCGRG 2 cut(s) 203, 704
BmrFI CCNGG 2 cut(s) 89, 182
BmrI ACTGGG 2 cut(s) 442, 457
BmsI GCATC 1 cut(s) 140
BmuI ACTGGG 2 cut(s) 442, 457
BpiI GAAGAC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 180, 705
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 420
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 448, 463
BseBI CCWGG 2 cut(s) 89, 182
BseDI CCNNGG 2 cut(s) 180, 705
BseGI GGATG 2 cut(s) 131, 700
BseLI CCNNNNNNNGG 2 cut(s) 419, 420
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 2 cut(s) 448, 463
BseRI GAGGAG 2 cut(s) 768, 807
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 218
BsiHKCI CYCGRG 2 cut(s) 203, 704
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 419, 420
BsmAI GTCTC 2 cut(s) 85, 571
BsnI GGCC 1 cut(s) 63
BsoBI CYCGRG 2 cut(s) 203, 704
Bsp1286I GDGCHC 1 cut(s) 218
BspACI CCGC 2 cut(s) 120, 148
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 420
BspFNI CGCG 1 cut(s) 280
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 448, 463
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 180, 705
Bst2UI CCWGG 2 cut(s) 89, 182
Bst4CI ACNGT 2 cut(s) 79, 776
Bst6I CTCTTC 2 cut(s) 687, 745
BstC8I GCNNGC 3 cut(s) 61, 443, 687
BstDEI CTNAG 2 cut(s) 428, 620
BstF5I GGATG 2 cut(s) 131, 700
BstFNI CGCG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstMAI GTCTC 2 cut(s) 85, 571
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 2 cut(s) 89, 182
BstNSI RCATGY 2 cut(s) 164, 445
BstSCI CCNGG 2 cut(s) 87, 180
BstSFI CTRYAG 1 cut(s) 75
BstUI CGCG 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 37
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 2 cut(s) 131, 700
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 3 cut(s) 61, 443, 687
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 59
CseI GACGC 1 cut(s) 286
CsiI ACCWGGT 1 cut(s) 87
CviAII CATG 5 cut(s) 99, 161, 442, 479, 669
DdeI CTNAG 2 cut(s) 428, 620
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 687, 745
EarI CTCTTC 2 cut(s) 687, 745
Ecl136II GAGCTC 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 496
Eco88I CYCGRG 2 cut(s) 203, 704
EcoICRI GAGCTC 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 506
EcoRII CCWGG 2 cut(s) 87, 180
EcoT38I GRGCYC 1 cut(s) 218
FaeI CATG 5 cut(s) 102, 164, 445, 482, 672
FatI CATG 5 cut(s) 98, 160, 441, 478, 668
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 118, 687
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 1 cut(s) 63
HapII CCGG 1 cut(s) 60
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 369
Hin1II CATG 5 cut(s) 102, 164, 445, 482, 672
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HincII GTYRAC 2 cut(s) 94, 518
HindII GTYRAC 2 cut(s) 94, 518
HindIII AAGCTT 2 cut(s) 283, 500
HinfI GANTC 4 cut(s) 33, 71, 697, 795
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 3 cut(s) 94, 518, 626
Hpy188I TCNGA 3 cut(s) 340, 429, 791
Hpy188III TCNNGA 1 cut(s) 704
Hpy8I GTNNAC 3 cut(s) 94, 518, 626
HpyAV CCTTC 2 cut(s) 325, 809
HpyCH4III ACNGT 2 cut(s) 79, 776
HpyCH4IV ACGT 1 cut(s) 760
HpyCH4V TGCA 3 cut(s) 245, 297, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 428, 620
HpySE526I ACGT 1 cut(s) 760
Hsp92II CATG 5 cut(s) 102, 164, 445, 482, 672
HspAI GCGC 1 cut(s) 367
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 221
LweI GCATC 1 cut(s) 140
MabI ACCWGGT 1 cut(s) 87
MaeII ACGT 1 cut(s) 760
MboII GAAGA 5 cut(s) 42, 502, 605, 704, 762
MfeI CAATTG 1 cut(s) 652
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 4 cut(s) 390, 434, 506, 652
MlyI GAGTC 2 cut(s) 27, 804
MmeI TCCRAC 1 cut(s) 769
MnlI CCTC 7 cut(s) 329, 523, 564, 700, 746, 778, 785
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 3 cut(s) 159, 224, 483
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 2 cut(s) 89, 182
MunI CAATTG 1 cut(s) 652
MvaI CCWGG 2 cut(s) 89, 182
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 128
NaeI GCCGGC 1 cut(s) 61
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 5 cut(s) 102, 164, 445, 482, 672
NspI RCATGY 2 cut(s) 164, 445
PaeI GCATGC 1 cut(s) 445
PaeR7I CTCGAG 1 cut(s) 203
PciI ACATGT 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 61
PfeI GAWTC 2 cut(s) 71, 697
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 2 cut(s) 27, 803
PpsI GAGTC 2 cut(s) 27, 803
PscI ACATGT 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 87, 180
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 87, 180
PspXI VCTCGAGB 1 cut(s) 203
RseI CAYNNNNRTG 3 cut(s) 159, 224, 483
SacI GAGCTC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 1 cut(s) 120
SchI GAGTC 2 cut(s) 27, 804
ScrFI CCNGG 2 cut(s) 89, 182
SduI GDGCHC 1 cut(s) 218
SexAI ACCWGGT 1 cut(s) 87
SfaNI GCATC 1 cut(s) 140
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 3 cut(s) 159, 224, 483
SmlI CTYRAG 2 cut(s) 203, 286
SmoI CTYRAG 2 cut(s) 203, 286
SphI GCATGC 1 cut(s) 445
Sse9I AATT 4 cut(s) 390, 434, 506, 652
SsiI CCGC 2 cut(s) 120, 148
SspI AATATT 1 cut(s) 358
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 87, 180
TaaI ACNGT 2 cut(s) 79, 776
TaiI ACGT 1 cut(s) 763
TaqI TCGA 4 cut(s) 204, 237, 722, 783
TasI AATT 4 cut(s) 390, 434, 506, 652
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 71, 697
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 258
TspRI CASTG 1 cut(s) 258
XapI RAATTY 1 cut(s) 506
XceI RCATGY 2 cut(s) 164, 445
XhoI CTCGAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.