RchiOBHm_Chr1g0327641
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000115
Physical Location & Seq
Forward (+)
16594680 .. 16595206
527 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55714

Sequence Viewer

Length: 495 bp
ATGAGCATGGCACCCCACTCCATTTTCAGCAAGAGCCTCAGATTTTCTCTACTGCTTTGTAGAAATCGACACCCAATGGAGGGATTTGTTTCACATTTGGGTAGAAGACTCATCAGCAACACCGAAATCCCAGCCGGCCAAGACGATTCTACGGTCTCCTACCTGGTTAATCCATGTGGGCTTTCCCCAGAAGCCGCCGTTGTAGCATCCCACAAGGTAAAGCTTCGATCTTTGGTGGAATCAGACTCCGTTTTAGCGCTTTTGAAACACTATGAATTATCAGATGCCCATATCTCAAAGGCTGTGCGGATACACCCACATGTTCTGGTGGCAAATGCCCAGGAAACCCTTTTGCCAAAGCTCGAGTTTTTGTGCTCCATAGGAATGTCAAGGCTCGACCTTGCAAAAACACTGACCTACAACCCAATTATTTTGACGCGAAGCTTGAAAAACTGCATTATACCCTGTTATACCTTCCTCAAAGAAATGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

164

Amino Acids

18.2

Weight (kDa)

9.06

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 85 - 163 6e-10 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AccII CGCG 1 cut(s) 439
AciI CCGC 2 cut(s) 195, 307
AcoI YGGCCR 1 cut(s) 136
AfeI AGCGCT 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 79, 80
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 2 cut(s) 265, 448
AjnI CCWGG 2 cut(s) 162, 339
AluBI AGCT 3 cut(s) 223, 361, 444
AluI AGCT 3 cut(s) 223, 361, 444
Alw21I GWGCWC 1 cut(s) 377
Alw26I GTCTC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 362
Aor51HI AGCGCT 1 cut(s) 258
AoxI GGCC 1 cut(s) 136
AspLEI GCGC 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 362
BanI GGYRCC 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 164, 341
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 160
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 164, 341
BmeT110I CYCGRG 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 2 cut(s) 164, 341
BmsI GCATC 2 cut(s) 215, 274
BpiI GAAGAC 1 cut(s) 112
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 339
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 80
Bse118I RCCGGY 1 cut(s) 134
BseBI CCWGG 2 cut(s) 164, 341
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 79, 80
BseMII CTCAG 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 1 cut(s) 439
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 377
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 2 cut(s) 79, 80
BsmAI GTCTC 1 cut(s) 160
BsnI GGCC 1 cut(s) 138
Bso31I GGTCTC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 1 cut(s) 227
BspACI CCGC 2 cut(s) 195, 307
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 160
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 164, 341
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 439
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 230
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 2 cut(s) 164, 341
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 162, 339
BstUI CGCG 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 112
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 1 cut(s) 136
CfoI GCGC 1 cut(s) 259
Cfr10I RCCGGY 1 cut(s) 134
CseI GACGC 1 cut(s) 445
CsiI ACCWGGT 1 cut(s) 162
CviAII CATG 3 cut(s) 7, 174, 320
DdeI CTNAG 1 cut(s) 38
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
EaeI YGGCCR 1 cut(s) 136
Eco31I GGTCTC 1 cut(s) 160
Eco47III AGCGCT 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 162, 339
FaeI CATG 3 cut(s) 10, 177, 323
FaiI YATR 8 cut(s) 8, 175, 273, 291, 321, 380, 461, 471
FatI CATG 3 cut(s) 6, 173, 319
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 195
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 195
GsaI CCCAGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 135
HgaI GACGC 1 cut(s) 445
HhaI GCGC 1 cut(s) 259
Hin1II CATG 3 cut(s) 10, 177, 323
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 2 cut(s) 221, 442
HinfI GANTC 4 cut(s) 108, 146, 239, 245
HpaII CCGG 1 cut(s) 135
Hpy188I TCNGA 3 cut(s) 41, 244, 283
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 404, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 3 cut(s) 10, 177, 323
HspAI GCGC 1 cut(s) 257
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 227
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 9 cut(s) 144, 148, 149, 176, 201, 311, 326, 353, 478
LweI GCATC 2 cut(s) 215, 274
MabI ACCWGGT 1 cut(s) 162
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MboII GAAGA 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 2 cut(s) 275, 426
MlyI GAGTC 2 cut(s) 102, 239
MnlI CCTC 3 cut(s) 47, 73, 488
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 2 cut(s) 318, 383
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 164, 341
MvaI CCWGG 2 cut(s) 164, 341
MvnI CGCG 1 cut(s) 439
MwoI GCNNNNNNNGC 1 cut(s) 203
NaeI GCCGGC 1 cut(s) 136
NdeII GATC 1 cut(s) 227
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 3 cut(s) 10, 177, 323
NlaIV GGNNCC 1 cut(s) 12
NspI RCATGY 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 362
PciI ACATGT 1 cut(s) 319
PdiI GCCGGC 1 cut(s) 136
PfeI GAWTC 2 cut(s) 146, 239
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 2 cut(s) 102, 239
PpsI GAGTC 2 cut(s) 102, 239
PscI ACATGT 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 162, 339
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 2 cut(s) 162, 339
PspN4I GGNNCC 1 cut(s) 12
PspXI VCTCGAGB 1 cut(s) 362
RseI CAYNNNNRTG 2 cut(s) 318, 383
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 227
SchI GAGTC 2 cut(s) 102, 239
ScrFI CCNGG 2 cut(s) 164, 341
SduI GDGCHC 1 cut(s) 377
SetI ASST 8 cut(s) 165, 219, 225, 363, 402, 419, 446, 476
SexAI ACCWGGT 1 cut(s) 162
SfaNI GCATC 2 cut(s) 215, 274
Sfr274I CTCGAG 1 cut(s) 362
SlaI CTCGAG 1 cut(s) 362
SmiMI CAYNNNNRTG 2 cut(s) 318, 383
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 2 cut(s) 275, 426
SsiI CCGC 2 cut(s) 195, 307
StyD4I CCNGG 2 cut(s) 162, 339
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 4 cut(s) 67, 226, 363, 396
TasI AATT 2 cut(s) 275, 426
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 146, 239
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 417
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 1 cut(s) 417
XceI RCATGY 1 cut(s) 323
XhoI CTCGAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.