mTERF
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_Rpb1_1 | PF04997 | 48 - 281 | 1.8e-10 | RNA polymerase Rpb1, domain 1 |
| RNA_pol_Rpb1_2 | PF00623 | 324 - 478 | 5.1e-33 | RNA polymerase Rpb1, domain 2 |
| RNA_pol_Rpb1_3 | PF04983 | 481 - 626 | 6.4e-10 | RNA polymerase Rpb1, domain 3 |
| RNA_pol_Rpb1_5 | PF04998 | 755 - 1181 | 7.7e-10 | RNA polymerase Rpb1, domain 5 |
| DUF3223 | PF11523 | 1801 - 1876 | 3.3e-27 | Protein of unknown function (DUF3223) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3537 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1313 |
| Acc36I | ACCTGC | 1 cut(s) | 5122 |
| Acc65I | GGTACC | 1 cut(s) | 1763 |
| AccB1I | GGYRCC | 1 cut(s) | 1763 |
| AccB7I | CCANNNNNTGG | 4 cut(s) | 143, 470, 4521, 5249 |
| AccBSI | CCGCTC | 1 cut(s) | 2463 |
| AccI | GTMKAC | 1 cut(s) | 4634 |
| AccII | CGCG | 1 cut(s) | 3552 |
| AcoI | YGGCCR | 2 cut(s) | 1557, 2119 |
| AcuI | CTGAAG | 9 cut(s) | 290, 317, 594, 1812, 3248, 4737, 4935, 5671, 5685 |
| AcyI | GRCGYC | 1 cut(s) | 1093 |
| AdeI | CACNNNGTG | 1 cut(s) | 1349 |
| AfeI | AGCGCT | 1 cut(s) | 275 |
| AflIII | ACRYGT | 3 cut(s) | 3682, 4342, 5359 |
| AgeI | ACCGGT | 1 cut(s) | 22 |
| AhlI | ACTAGT | 3 cut(s) | 758, 4184, 4418 |
| AjiI | CACGTC | 1 cut(s) | 259 |
| AjnI | CCWGG | 9 cut(s) | 193, 469, 1195, 2136, 2344, 3341, 3526, 3671, 3961 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 198, 230, 3221, 3253 |
| AleI | CACNNNNGTG | 1 cut(s) | 261 |
| Alw21I | GWGCWC | 5 cut(s) | 906, 1676, 2180, 2637, 4883 |
| Ama87I | CYCGRG | 2 cut(s) | 155, 867 |
| Aor51HI | AGCGCT | 1 cut(s) | 275 |
| AoxI | GGCC | 9 cut(s) | 145, 1193, 1250, 1557, 2119, 2818, 3084, 4092, 4541 |
| AseI | ATTAAT | 1 cut(s) | 1323 |
| AsiGI | ACCGGT | 1 cut(s) | 22 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 964, 1797, 3957 |
| Asp718I | GGTACC | 1 cut(s) | 1763 |
| AspLEI | GCGC | 9 cut(s) | 276, 1549, 3423, 3503, 3554, 4498, 4841, 4922, 5078 |
| AspS9I | GGNCC | 9 cut(s) | 325, 1340, 1708, 2322, 4092, 4176, 4541, 4685, 5240 |
| AsuC2I | CCSGG | 1 cut(s) | 3941 |
| AsuII | TTCGAA | 3 cut(s) | 2002, 2024, 3951 |
| AsuNHI | GCTAGC | 1 cut(s) | 5659 |
| AvaI | CYCGRG | 2 cut(s) | 155, 867 |
| AvaII | GGWCC | 7 cut(s) | 325, 1340, 1708, 2322, 4176, 4685, 5240 |
| BaeGI | GKGCMC | 3 cut(s) | 1182, 4696, 5000 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1747, 1780, 2742, 2775 |
| BalI | TGGCCA | 1 cut(s) | 1559 |
| BamHI | GGATCC | 2 cut(s) | 706, 2269 |
| BanI | GGYRCC | 1 cut(s) | 1763 |
| BanII | GRGCYC | 3 cut(s) | 906, 2180, 2637 |
| BbsI | GAAGAC | 2 cut(s) | 582, 4045 |
| Bbv12I | GWGCWC | 5 cut(s) | 906, 1676, 2180, 2637, 4883 |
| BceAI | ACGGC | 4 cut(s) | 2631, 4329, 4826, 4907 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1769, 1803 |
| BciT130I | CCWGG | 9 cut(s) | 195, 471, 1197, 2138, 2346, 3343, 3528, 3673, 3963 |
| BciVI | GTATCC | 3 cut(s) | 617, 1040, 2208 |
| BclI | TGATCA | 3 cut(s) | 753, 829, 3406 |
| BcnI | CCSGG | 1 cut(s) | 3941 |
| BcuI | ACTAGT | 3 cut(s) | 758, 4184, 4418 |
| BfmI | CTRYAG | 8 cut(s) | 414, 1132, 1611, 2226, 2692, 2754, 3819, 5614 |
| BfoI | RGCGCY | 3 cut(s) | 277, 3424, 4842 |
| BfuAI | ACCTGC | 1 cut(s) | 5122 |
| BfuI | GTATCC | 3 cut(s) | 617, 1040, 2208 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4313 |
| BmcAI | AGTACT | 2 cut(s) | 4291, 5684 |
| Bme18I | GGWCC | 7 cut(s) | 325, 1340, 1708, 2322, 4176, 4685, 5240 |
| BmeT110I | CYCGRG | 2 cut(s) | 155, 867 |
| BmgBI | CACGTC | 1 cut(s) | 259 |
| BmgT120I | GGNCC | 9 cut(s) | 325, 1340, 1708, 2322, 4092, 4176, 4541, 4685, 5240 |
| BmrI | ACTGGG | 5 cut(s) | 1005, 1384, 3113, 4027, 5748 |
| BmtI | GCTAGC | 1 cut(s) | 5663 |
| BmuI | ACTGGG | 5 cut(s) | 1005, 1384, 3113, 4027, 5748 |
| BpiI | GAAGAC | 2 cut(s) | 582, 4045 |
| BpmI | CTGGAG | 5 cut(s) | 1698, 2009, 3278, 3688, 5712 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5655 |
| Bpu14I | TTCGAA | 3 cut(s) | 2002, 2024, 3951 |
| BpuEI | CTTGAG | 5 cut(s) | 600, 2311, 4938, 5016, 5055 |
| BpuMI | CCSGG | 1 cut(s) | 3941 |
| Bsa29I | ATCGAT | 1 cut(s) | 92 |
| BsaBI | GATNNNNATC | 7 cut(s) | 361, 834, 1230, 2948, 3031, 5433, 5451 |
| BsaHI | GRCGYC | 1 cut(s) | 1093 |
| BsaI | GGTCTC | 1 cut(s) | 4238 |
| BsaWI | WCCGGW | 1 cut(s) | 22 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 4405, 4435, 5224, 5254, 5741 |
| Bse118I | RCCGGY | 4 cut(s) | 22, 2121, 2492, 5162 |
| Bse3DI | GCAATG | 7 cut(s) | 1577, 1652, 1826, 2295, 2532, 3447, 4336 |
| Bse8I | GATNNNNATC | 7 cut(s) | 361, 834, 1230, 2948, 3031, 5433, 5451 |
| BseBI | CCWGG | 9 cut(s) | 195, 471, 1197, 2138, 2346, 3343, 3528, 3673, 3963 |
| BseCI | ATCGAT | 1 cut(s) | 92 |
| BseJI | GATNNNNATC | 7 cut(s) | 361, 834, 1230, 2948, 3031, 5433, 5451 |
| BseMI | GCAATG | 7 cut(s) | 1577, 1652, 1826, 2295, 2532, 3447, 4336 |
| BseRI | GAGGAG | 2 cut(s) | 1079, 5366 |
| BseSI | GKGCMC | 3 cut(s) | 1182, 4696, 5000 |
| BseYI | CCCAGC | 5 cut(s) | 3975, 4278, 4383, 4568, 5249 |
| BsgI | GTGCAG | 4 cut(s) | 2443, 3395, 5166, 5289 |
| Bsh1236I | CGCG | 1 cut(s) | 3552 |
| BshFI | GGCC | 9 cut(s) | 147, 1195, 1252, 1559, 2121, 2820, 3086, 4094, 4543 |
| BshNI | GGYRCC | 1 cut(s) | 1763 |
| BshTI | ACCGGT | 1 cut(s) | 22 |
| BshVI | ATCGAT | 1 cut(s) | 92 |
| BsiHKAI | GWGCWC | 5 cut(s) | 906, 1676, 2180, 2637, 4883 |
| BsiHKCI | CYCGRG | 2 cut(s) | 155, 867 |
| BsiSI | CCGG | 6 cut(s) | 23, 2122, 2493, 3854, 3941, 5163 |
| BsmI | GAATGC | 5 cut(s) | 1371, 3796, 4531, 4570, 5669 |
| BsnI | GGCC | 9 cut(s) | 147, 1195, 1252, 1559, 2121, 2820, 3086, 4094, 4543 |
| Bso31I | GGTCTC | 1 cut(s) | 4238 |
| BsoBI | CYCGRG | 2 cut(s) | 155, 867 |
| Bsp119I | TTCGAA | 3 cut(s) | 2002, 2024, 3951 |
| Bsp1286I | GDGCHC | 8 cut(s) | 906, 1182, 1676, 2180, 2637, 4696, 4883, 5000 |
| Bsp1407I | TGTACA | 2 cut(s) | 83, 1078 |
| Bsp19I | CCATGG | 1 cut(s) | 4238 |
| BspANI | GGCC | 9 cut(s) | 147, 1195, 1252, 1559, 2121, 2820, 3086, 4094, 4543 |
| BspDI | ATCGAT | 1 cut(s) | 92 |
| BspFNI | CGCG | 1 cut(s) | 3552 |
| BspHI | TCATGA | 1 cut(s) | 73 |
| BspMAI | CTGCAG | 5 cut(s) | 1615, 2230, 2696, 2758, 3823 |
| BspMI | ACCTGC | 1 cut(s) | 5122 |
| BspOI | GCTAGC | 1 cut(s) | 5663 |
| BspT104I | TTCGAA | 3 cut(s) | 2002, 2024, 3951 |
| BspT107I | GGYRCC | 1 cut(s) | 1763 |
| BspTNI | GGTCTC | 1 cut(s) | 4238 |
| BsrBI | CCGCTC | 1 cut(s) | 2463 |
| BsrDI | GCAATG | 7 cut(s) | 1577, 1652, 1826, 2295, 2532, 3447, 4336 |
| BsrFI | RCCGGY | 4 cut(s) | 22, 2121, 2492, 5162 |
| BsrGI | TGTACA | 2 cut(s) | 83, 1078 |
| BssAI | RCCGGY | 4 cut(s) | 22, 2121, 2492, 5162 |
| BssNI | GRCGYC | 1 cut(s) | 1093 |
| BssT1I | CCWWGG | 6 cut(s) | 897, 2116, 4095, 4238, 4356, 4688 |
| Bst2UI | CCWGG | 9 cut(s) | 195, 471, 1197, 2138, 2346, 3343, 3528, 3673, 3963 |
| Bst6I | CTCTTC | 4 cut(s) | 982, 2584, 3744, 5255 |
| BstACI | GRCGYC | 1 cut(s) | 1093 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1122, 1642, 1658, 1828 |
| BstAUI | TGTACA | 2 cut(s) | 83, 1078 |
| BstBI | TTCGAA | 3 cut(s) | 2002, 2024, 3951 |
| BstDSI | CCRYGG | 1 cut(s) | 4238 |
| BstFNI | CGCG | 1 cut(s) | 3552 |
| BstH2I | RGCGCY | 3 cut(s) | 277, 3424, 4842 |
| BstHHI | GCGC | 9 cut(s) | 276, 1549, 3423, 3503, 3554, 4498, 4841, 4922, 5078 |
| BstNI | CCWGG | 9 cut(s) | 195, 471, 1197, 2138, 2346, 3343, 3528, 3673, 3963 |
| BstNSI | RCATGY | 5 cut(s) | 2705, 3501, 3686, 4346, 5363 |
| BstSFI | CTRYAG | 8 cut(s) | 414, 1132, 1611, 2226, 2692, 2754, 3819, 5614 |
| BstSLI | GKGCMC | 3 cut(s) | 1182, 4696, 5000 |
| BstUI | CGCG | 1 cut(s) | 3552 |
| BstV2I | GAAGAC | 2 cut(s) | 582, 4045 |
| BstX2I | RGATCY | 8 cut(s) | 706, 1231, 2269, 2465, 2587, 2883, 3026, 3032 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 4125, 4170, 4209 |
| BstYI | RGATCY | 8 cut(s) | 706, 1231, 2269, 2465, 2587, 2883, 3026, 3032 |
| Bsu15I | ATCGAT | 1 cut(s) | 92 |
| BsuI | GTATCC | 3 cut(s) | 617, 1040, 2208 |
| BsuRI | GGCC | 9 cut(s) | 147, 1195, 1252, 1559, 2121, 2820, 3086, 4094, 4543 |
| BsuTUI | ATCGAT | 1 cut(s) | 92 |
| BtgI | CCRYGG | 1 cut(s) | 4238 |
| BtgZI | GCGATG | 1 cut(s) | 1152 |
| BtrI | CACGTC | 1 cut(s) | 259 |
| BtsI | GCAGTG | 1 cut(s) | 3993 |
| BveI | ACCTGC | 1 cut(s) | 5122 |
| CciI | TCATGA | 1 cut(s) | 73 |
| CfoI | GCGC | 9 cut(s) | 276, 1549, 3423, 3503, 3554, 4498, 4841, 4922, 5078 |
| Cfr10I | RCCGGY | 4 cut(s) | 22, 2121, 2492, 5162 |
| Cfr13I | GGNCC | 9 cut(s) | 325, 1340, 1708, 2322, 4092, 4176, 4541, 4685, 5240 |
| ClaI | ATCGAT | 1 cut(s) | 92 |
| CseI | GACGC | 1 cut(s) | 1082 |
| CspAI | ACCGGT | 1 cut(s) | 22 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2463, 2498, 3511, 3546 |
| DraI | TTTAAA | 1 cut(s) | 2965 |
| DraIII | CACNNNGTG | 1 cut(s) | 1349 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1313 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1313 |
| EaeI | YGGCCR | 2 cut(s) | 1557, 2119 |
| Eam1104I | CTCTTC | 4 cut(s) | 982, 2584, 3744, 5255 |
| EarI | CTCTTC | 4 cut(s) | 982, 2584, 3744, 5255 |
| EciI | GGCGGA | 1 cut(s) | 5716 |
| Ecl136II | GAGCTC | 3 cut(s) | 904, 2178, 2635 |
| Eco130I | CCWWGG | 6 cut(s) | 897, 2116, 4095, 4238, 4356, 4688 |
| Eco147I | AGGCCT | 2 cut(s) | 1195, 1252 |
| Eco24I | GRGCYC | 3 cut(s) | 906, 2180, 2637 |
| Eco31I | GGTCTC | 1 cut(s) | 4238 |
| Eco47I | GGWCC | 7 cut(s) | 325, 1340, 1708, 2322, 4176, 4685, 5240 |
| Eco47III | AGCGCT | 1 cut(s) | 275 |
| Eco53kI | GAGCTC | 3 cut(s) | 904, 2178, 2635 |
| Eco57I | CTGAAG | 9 cut(s) | 290, 317, 594, 1812, 3248, 4737, 4935, 5671, 5685 |
| Eco88I | CYCGRG | 2 cut(s) | 155, 867 |
| EcoICRI | GAGCTC | 3 cut(s) | 904, 2178, 2635 |
| EcoO109I | RGGNCCY | 3 cut(s) | 325, 1708, 4685 |
| EcoRI | GAATTC | 2 cut(s) | 2231, 3935 |
| EcoRII | CCWGG | 9 cut(s) | 193, 469, 1195, 2136, 2344, 3341, 3526, 3671, 3961 |
| EcoT14I | CCWWGG | 6 cut(s) | 897, 2116, 4095, 4238, 4356, 4688 |
| EcoT22I | ATGCAT | 3 cut(s) | 1006, 3292, 5412 |
| EcoT38I | GRGCYC | 3 cut(s) | 906, 2180, 2637 |
| ErhI | CCWWGG | 6 cut(s) | 897, 2116, 4095, 4238, 4356, 4688 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 915, 947, 2727, 2759, 3456, 3488, 5591, 5623 |
| FauI | CCCGC | 3 cut(s) | 989, 2788, 4675 |
| FauNDI | CATATG | 5 cut(s) | 1036, 1950, 3358, 3636, 3783 |
| FbaI | TGATCA | 3 cut(s) | 753, 829, 3406 |
| FblI | GTMKAC | 1 cut(s) | 4634 |
| FriOI | GRGCYC | 3 cut(s) | 906, 2180, 2637 |
| GlaI | GCGC | 9 cut(s) | 275, 1548, 3422, 3502, 3553, 4497, 4840, 4921, 5077 |
| GsaI | CCCAGC | 5 cut(s) | 3979, 4282, 4387, 4572, 5253 |
| GsuI | CTGGAG | 5 cut(s) | 1698, 2009, 3278, 3688, 5712 |
| HaeII | RGCGCY | 3 cut(s) | 277, 3424, 4842 |
| HaeIII | GGCC | 9 cut(s) | 147, 1195, 1252, 1559, 2121, 2820, 3086, 4094, 4543 |
| HapII | CCGG | 6 cut(s) | 23, 2122, 2493, 3854, 3941, 5163 |
| HgaI | GACGC | 1 cut(s) | 1082 |
| HhaI | GCGC | 9 cut(s) | 276, 1549, 3423, 3503, 3554, 4498, 4841, 4922, 5078 |
| Hin1I | GRCGYC | 1 cut(s) | 1093 |
| Hin6I | GCGC | 9 cut(s) | 274, 1547, 3421, 3501, 3552, 4496, 4839, 4920, 5076 |
| HinP1I | GCGC | 9 cut(s) | 274, 1547, 3421, 3501, 3552, 4496, 4839, 4920, 5076 |
| HpaII | CCGG | 6 cut(s) | 23, 2122, 2493, 3854, 3941, 5163 |
| Hpy99I | CGWCG | 2 cut(s) | 3166, 4315 |
| HpyCH4IV | ACGT | 3 cut(s) | 258, 1296, 5215 |
| HpySE526I | ACGT | 3 cut(s) | 258, 1296, 5215 |
| Hsp92I | GRCGYC | 1 cut(s) | 1093 |
| HspAI | GCGC | 9 cut(s) | 274, 1547, 3421, 3501, 3552, 4496, 4839, 4920, 5076 |
| KpnI | GGTACC | 1 cut(s) | 1767 |
| KroI | GCCGGC | 1 cut(s) | 2121 |
| KroNI | GCCGGC | 1 cut(s) | 2123 |
| Ksp22I | TGATCA | 3 cut(s) | 753, 829, 3406 |
| LmnI | GCTCC | 8 cut(s) | 110, 434, 901, 1420, 3707, 3830, 4849, 5353 |
| MaeII | ACGT | 3 cut(s) | 258, 1296, 5215 |
| MaeIII | GTNAC | 8 cut(s) | 688, 813, 892, 1392, 2095, 2853, 2954, 3882 |
| MbiI | CCGCTC | 1 cut(s) | 2463 |
| MfeI | CAATTG | 3 cut(s) | 437, 822, 1553 |
| MflI | RGATCY | 8 cut(s) | 706, 1231, 2269, 2465, 2587, 2883, 3026, 3032 |
| MhlI | GDGCHC | 8 cut(s) | 906, 1182, 1676, 2180, 2637, 4696, 4883, 5000 |
| MlsI | TGGCCA | 1 cut(s) | 1559 |
| MluNI | TGGCCA | 1 cut(s) | 1559 |
| MlyI | GAGTC | 4 cut(s) | 1904, 2060, 2344, 2807 |
| MmeI | TCCRAC | 7 cut(s) | 25, 156, 1280, 2247, 3060, 4502, 4599 |
| Mox20I | TGGCCA | 1 cut(s) | 1559 |
| Mph1103I | ATGCAT | 3 cut(s) | 1006, 3292, 5412 |
| MroNI | GCCGGC | 1 cut(s) | 2121 |
| MroXI | GAANNNNTTC | 3 cut(s) | 964, 1797, 3957 |
| MscI | TGGCCA | 1 cut(s) | 1559 |
| MslI | CAYNNNNRTG | 7 cut(s) | 261, 2841, 4084, 4123, 4168, 4207, 4237 |
| Msp20I | TGGCCA | 1 cut(s) | 1559 |
| MspA1I | CMGCKG | 4 cut(s) | 1444, 3434, 3623, 4670 |
| MspI | CCGG | 6 cut(s) | 23, 2122, 2493, 3854, 3941, 5163 |
| MunI | CAATTG | 3 cut(s) | 437, 822, 1553 |
| Mva1269I | GAATGC | 5 cut(s) | 1371, 3796, 4531, 4570, 5669 |
| MvaI | CCWGG | 9 cut(s) | 195, 471, 1197, 2138, 2346, 3343, 3528, 3673, 3963 |
| MvnI | CGCG | 1 cut(s) | 3552 |
| NaeI | GCCGGC | 1 cut(s) | 2123 |
| NciI | CCSGG | 1 cut(s) | 3941 |
| NcoI | CCATGG | 1 cut(s) | 4238 |
| NdeI | CATATG | 5 cut(s) | 1036, 1950, 3358, 3636, 3783 |
| NgoMIV | GCCGGC | 1 cut(s) | 2121 |
| NheI | GCTAGC | 1 cut(s) | 5659 |
| NmeAIII | GCCGAG | 1 cut(s) | 5677 |
| NmuCI | GTSAC | 4 cut(s) | 892, 1392, 2954, 3882 |
| NsiI | ATGCAT | 3 cut(s) | 1006, 3292, 5412 |
| NspI | RCATGY | 5 cut(s) | 2705, 3501, 3686, 4346, 5363 |
| NspV | TTCGAA | 3 cut(s) | 2002, 2024, 3951 |
| OliI | CACNNNNGTG | 1 cut(s) | 261 |
| PaeR7I | CTCGAG | 1 cut(s) | 155 |
| PagI | TCATGA | 1 cut(s) | 73 |
| PceI | AGGCCT | 2 cut(s) | 1195, 1252 |
| PciI | ACATGT | 3 cut(s) | 3682, 4342, 5359 |
| PctI | GAATGC | 5 cut(s) | 1371, 3796, 4531, 4570, 5669 |
| PdiI | GCCGGC | 1 cut(s) | 2123 |
| PdmI | GAANNNNTTC | 3 cut(s) | 964, 1797, 3957 |
| PflMI | CCANNNNNTGG | 4 cut(s) | 143, 470, 4521, 5249 |
| PfoI | TCCNGGA | 2 cut(s) | 3939, 3961 |
| PinAI | ACCGGT | 1 cut(s) | 22 |
| PleI | GAGTC | 4 cut(s) | 1903, 2060, 2344, 2807 |
| PpsI | GAGTC | 4 cut(s) | 1903, 2060, 2344, 2807 |
| PpuMI | RGGWCCY | 3 cut(s) | 325, 1708, 4685 |
| PscI | ACATGT | 3 cut(s) | 3682, 4342, 5359 |
| PshBI | ATTAAT | 1 cut(s) | 1323 |
| PsiI | TTATAA | 1 cut(s) | 3537 |
| Psp124BI | GAGCTC | 3 cut(s) | 906, 2180, 2637 |
| Psp5II | RGGWCCY | 3 cut(s) | 325, 1708, 4685 |
| Psp6I | CCWGG | 9 cut(s) | 193, 469, 1195, 2136, 2344, 3341, 3526, 3671, 3961 |
| PspFI | CCCAGC | 5 cut(s) | 3975, 4278, 4383, 4568, 5249 |
| PspGI | CCWGG | 9 cut(s) | 193, 469, 1195, 2136, 2344, 3341, 3526, 3671, 3961 |
| PspPI | GGNCC | 9 cut(s) | 325, 1340, 1708, 2322, 4092, 4176, 4541, 4685, 5240 |
| PspPPI | RGGWCCY | 3 cut(s) | 325, 1708, 4685 |
| PstI | CTGCAG | 5 cut(s) | 1615, 2230, 2696, 2758, 3823 |
| PsuI | RGATCY | 8 cut(s) | 706, 1231, 2269, 2465, 2587, 2883, 3026, 3032 |
| PvuII | CAGCTG | 3 cut(s) | 1444, 3434, 3623 |
| RseI | CAYNNNNRTG | 7 cut(s) | 261, 2841, 4084, 4123, 4168, 4207, 4237 |
| SacI | GAGCTC | 3 cut(s) | 906, 2180, 2637 |
| Sau96I | GGNCC | 9 cut(s) | 325, 1340, 1708, 2322, 4092, 4176, 4541, 4685, 5240 |
| ScaI | AGTACT | 2 cut(s) | 4291, 5684 |
| SchI | GAGTC | 4 cut(s) | 1904, 2060, 2344, 2807 |
| SduI | GDGCHC | 8 cut(s) | 906, 1182, 1676, 2180, 2637, 4696, 4883, 5000 |
| SfcI | CTRYAG | 8 cut(s) | 414, 1132, 1611, 2226, 2692, 2754, 3819, 5614 |
| Sfr274I | CTCGAG | 1 cut(s) | 155 |
| SfuI | TTCGAA | 3 cut(s) | 2002, 2024, 3951 |
| SinI | GGWCC | 7 cut(s) | 325, 1340, 1708, 2322, 4176, 4685, 5240 |
| SlaI | CTCGAG | 1 cut(s) | 155 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 261, 2841, 4084, 4123, 4168, 4207, 4237 |
| SmlI | CTYRAG | 6 cut(s) | 155, 615, 2326, 4953, 5031, 5070 |
| SmoI | CTYRAG | 6 cut(s) | 155, 615, 2326, 4953, 5031, 5070 |
| SpeI | ACTAGT | 3 cut(s) | 758, 4184, 4418 |
| SseBI | AGGCCT | 2 cut(s) | 1195, 1252 |
| SspI | AATATT | 2 cut(s) | 1087, 1526 |
| SstI | GAGCTC | 3 cut(s) | 906, 2180, 2637 |
| StuI | AGGCCT | 2 cut(s) | 1195, 1252 |
| StyI | CCWWGG | 6 cut(s) | 897, 2116, 4095, 4238, 4356, 4688 |
| TaiI | ACGT | 3 cut(s) | 261, 1299, 5218 |
| TaqII | GACCGA | 2 cut(s) | 2310, 5705 |
| TatI | WGTACW | 8 cut(s) | 83, 1078, 3899, 4103, 4187, 4289, 4421, 5682 |
| TauI | GCSGC | 2 cut(s) | 2708, 4748 |
| TseFI | GTSAC | 4 cut(s) | 892, 1392, 2954, 3882 |
| Tsp45I | GTSAC | 4 cut(s) | 892, 1392, 2954, 3882 |
| TspGWI | ACGGA | 1 cut(s) | 636 |
| Van91I | CCANNNNNTGG | 4 cut(s) | 143, 470, 4521, 5249 |
| VpaK11BI | GGWCC | 7 cut(s) | 325, 1340, 1708, 2322, 4176, 4685, 5240 |
| VspI | ATTAAT | 1 cut(s) | 1323 |
| XceI | RCATGY | 5 cut(s) | 2705, 3501, 3686, 4346, 5363 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 589, 4407 |
| XhoI | CTCGAG | 1 cut(s) | 155 |
| XmiI | GTMKAC | 1 cut(s) | 4634 |
| XmnI | GAANNNNTTC | 3 cut(s) | 964, 1797, 3957 |
| ZrmI | AGTACT | 2 cut(s) | 4291, 5684 |
| Zsp2I | ATGCAT | 3 cut(s) | 1006, 3292, 5412 |