Rroxscaffold_4G00324950
ERF Family

Mitochondrial transcription termination factor family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000115
Physical Location & Seq
Forward (+)
56653253 .. 56655791
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00324950.1

Sequence Viewer

Length: 825 bp
ATGTGGGTAAGTGGGTTGTCACCGCAAGGTACACTTTTAGCATCCAAGTGGATGAAGTTACGATCCGCAGAGAAAGCAGACTCTGTTTTGGCCGTTTTGAGAAGCCATGGATTTTCCAACGCTCAAATCTCAGTGATTGTTAGGGCGTGCCCAAAAGTCCTTCAACTCGATGCTGAGAAAACCCTTTTGCCCAAGCTCGAGGTTTTCATATCTCTCGGAGTTGCGAAGGAGGACCTCGCAAAAGCTATAACTCGTGCTCCCACTCTTCTTCTGACCAGTCTGGAGAACCGGATCGTACCCAATGTTGATTTCCTCGTCAGGACTCTTTCCTCTGAGAAACGAGTTGTCTCTGTTTTCAAGAGATGCCCGCGGATTTTCCATCAGAATCAAAGCAAAGATGTTGTGCCGAATATTGAGGTTTTGAGAGAATTAGGTATGCCCCAATCATGCATTTCTCTGTTTCTAGCTCATTTTAGTCACGTGTTGCTTCAAGATCAGGAAAAATTTGGTGCATTAGTTCGTGGGGTTAAGGAAATTGGATTTAGTTTTGAGAATTCAATATCTGCGGTGGCACTAGGCGCATTGCGTACTAAGAATAGTAAGTCCATAATGAATCGAAGCCGCCGAGTTTATATGACGAAATGGGGTTGGTCTGAGGATGATGTTCACTCTGCCTTGAAGAAGTTCCCCCATTGTATGTTCAAGTCGGAGAAGAAAATAATGCAAGCAATGGATTTTCTGGTGAACAAGATGGGGTTGCCTTCAGGAATCGTTGTCAAATTCCCGTGCTTTGATACTAAGAATAGTAAGTTGATATGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

274

Amino Acids

30.79

Weight (kDa)

9.9

Isoelectric Point (pI)

49.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 30 - 184 1.1e-24 mTERF
mTERF PF02536 208 - 264 3.6e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 370
AciI CCGC 6 cut(s) 23, 66, 368, 370, 566, 622
AclWI GGATC 2 cut(s) 57, 299
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 3 cut(s) 503, 553, 779
AcuI CTGAAG 1 cut(s) 747
AcvI CACGTG 1 cut(s) 481
AfaI GTAC 3 cut(s) 31, 297, 589
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 6 cut(s) 164, 358, 491, 558, 679, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 293, 325
AluBI AGCT 3 cut(s) 196, 245, 467
AluI AGCT 3 cut(s) 196, 245, 467
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 352
AlwI GGATC 2 cut(s) 57, 299
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 90
ApoI RAATTY 3 cut(s) 503, 553, 779
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 2 cut(s) 12, 754
AvaI CYCGRG 1 cut(s) 197
AvaII GGWCC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 152
BauI CACGAG 1 cut(s) 252
BbrPI CACGTG 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 259
BccI CCATC 2 cut(s) 387, 745
BceAI ACGGC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 2 cut(s) 464, 575
BisI GCNGC 1 cut(s) 622
BlsI GCNGC 1 cut(s) 623
Bme18I GGWCC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 232
BmsI GCATC 3 cut(s) 50, 160, 353
BpmI CTGGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 481
BsaJI CCNNGG 2 cut(s) 106, 368
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 2 cut(s) 581, 735
BseDI CCNNGG 2 cut(s) 106, 368
BseGI GGATG 3 cut(s) 41, 57, 664
BseMI GCAATG 2 cut(s) 581, 735
BseMII CTCAG 4 cut(s) 144, 165, 324, 645
BseNI ACTGG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 352
BsnI GGCC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 152, 259
Bsp143I GATC 3 cut(s) 62, 291, 493
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 6 cut(s) 23, 66, 368, 370, 566, 622
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 4 cut(s) 143, 166, 325, 646
BspFNI CGCG 1 cut(s) 370
BspPI GGATC 2 cut(s) 57, 299
BsrDI GCAATG 2 cut(s) 581, 735
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 2 cut(s) 106, 368
BssMI GATC 3 cut(s) 62, 291, 493
BssSI CACGAG 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 270
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 3 cut(s) 148, 368, 726
BstDEI CTNAG 6 cut(s) 130, 174, 333, 591, 654, 798
BstDSI CCRYGG 2 cut(s) 106, 368
BstF5I GGATG 3 cut(s) 41, 57, 664
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 3 cut(s) 65, 294, 496
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 3 cut(s) 62, 291, 493
BstMWI GCNNNNNNNGC 2 cut(s) 74, 578
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 1 cut(s) 370
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 2 cut(s) 106, 368
BtsCI GGATG 3 cut(s) 41, 57, 664
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 3 cut(s) 148, 368, 726
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 1 cut(s) 232
Cfr42I CCGCGG 1 cut(s) 371
Csp6I GTAC 3 cut(s) 30, 296, 588
CviAII CATG 2 cut(s) 107, 447
CviJI RGCY 6 cut(s) 92, 105, 196, 245, 467, 621
CviKI_1 RGCY 6 cut(s) 92, 105, 196, 245, 467, 621
CviQI GTAC 3 cut(s) 30, 296, 588
DdeI CTNAG 6 cut(s) 130, 174, 333, 591, 654, 798
DpnI GATC 3 cut(s) 64, 293, 495
DpnII GATC 3 cut(s) 62, 291, 493
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 747
Eco72I CACGTG 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 197
EcoO109I RGGNCCY 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 106
EcoT22I ATGCAT 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 2 cut(s) 110, 450
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 2 cut(s) 106, 446
FauI CCCGC 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 622
FokI GGATG 3 cut(s) 28, 64, 671
Fsp4HI GCNGC 1 cut(s) 622
FspBI CTAG 2 cut(s) 464, 575
GlaI GCGC 1 cut(s) 580
GluI GCNGC 1 cut(s) 622
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 289
HhaI GCGC 1 cut(s) 581
Hin1II CATG 2 cut(s) 110, 450
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HinfI GANTC 5 cut(s) 80, 322, 385, 613, 768
HpaII CCGG 1 cut(s) 289
HphI GGTGA 2 cut(s) 12, 754
Hpy166II GTNNAC 3 cut(s) 32, 667, 745
Hpy188I TCNGA 6 cut(s) 218, 273, 334, 384, 655, 709
Hpy188III TCNNGA 6 cut(s) 281, 319, 358, 491, 497, 765
Hpy8I GTNNAC 3 cut(s) 32, 667, 745
HpyAV CCTTC 3 cut(s) 170, 220, 771
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 450, 512, 724
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 578
HpyF3I CTNAG 6 cut(s) 130, 174, 333, 591, 654, 798
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 2 cut(s) 110, 450
HspAI GCGC 1 cut(s) 579
KspI CCGCGG 1 cut(s) 371
Kzo9I GATC 3 cut(s) 62, 291, 493
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 7 cut(s) 266, 289, 302, 304, 482, 725, 750
LweI GCATC 3 cut(s) 50, 160, 353
MaeI CTAG 2 cut(s) 464, 575
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 18, 57, 476
MalI GATC 3 cut(s) 64, 293, 495
MboI GATC 3 cut(s) 62, 291, 493
MboII GAAGA 4 cut(s) 257, 260, 691, 724
MhlI GDGCHC 2 cut(s) 152, 259
MluCI AATT 6 cut(s) 428, 503, 534, 553, 779, 820
MlyI GAGTC 2 cut(s) 74, 316
MmeI TCCRAC 2 cut(s) 141, 687
MnlI CCTC 7 cut(s) 193, 223, 245, 323, 340, 409, 649
Mph1103I ATGCAT 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 46
MspA1I CMGCKG 1 cut(s) 370
MspI CCGG 1 cut(s) 289
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 74, 578
NcoI CCATGG 1 cut(s) 106
NdeII GATC 3 cut(s) 62, 291, 493
NlaIII CATG 2 cut(s) 110, 450
NmeAIII GCCGAG 1 cut(s) 650
NmuCI GTSAC 2 cut(s) 18, 476
NsiI ATGCAT 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 3 cut(s) 385, 613, 768
PkrI GCNGC 1 cut(s) 623
PleI GAGTC 2 cut(s) 74, 316
PmaCI CACGTG 1 cut(s) 481
PmlI CACGTG 1 cut(s) 481
PpsI GAGTC 2 cut(s) 74, 316
Ppu21I YACGTR 1 cut(s) 481
PpuMI RGGWCCY 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 232
PspCI CACGTG 1 cut(s) 481
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
PspXI VCTCGAGB 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 83
RsaI GTAC 3 cut(s) 31, 297, 589
RsaNI GTAC 3 cut(s) 30, 296, 588
RseI CAYNNNNRTG 1 cut(s) 46
SacII CCGCGG 1 cut(s) 371
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 1 cut(s) 622
Sau3AI GATC 3 cut(s) 62, 291, 493
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 2 cut(s) 74, 316
SduI GDGCHC 2 cut(s) 152, 259
SetI ASST 9 cut(s) 31, 198, 204, 237, 247, 420, 436, 469, 483
SfaNI GCATC 3 cut(s) 50, 160, 353
Sfr274I CTCGAG 1 cut(s) 197
Sfr303I CCGCGG 1 cut(s) 371
SgrBI CCGCGG 1 cut(s) 371
SinI GGWCC 1 cut(s) 232
SlaI CTCGAG 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 6 cut(s) 428, 503, 534, 553, 779, 820
SsiI CCGC 6 cut(s) 23, 66, 368, 370, 566, 622
SspI AATATT 1 cut(s) 412
SspMI CTAG 2 cut(s) 464, 575
StyI CCWWGG 1 cut(s) 106
TaiI ACGT 1 cut(s) 483
TaqI TCGA 3 cut(s) 168, 198, 616
TasI AATT 6 cut(s) 428, 503, 534, 553, 779, 820
TauI GCSGC 1 cut(s) 624
TfiI GAWTC 3 cut(s) 385, 613, 768
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 2 cut(s) 18, 476
Tsp45I GTSAC 2 cut(s) 18, 476
TspDTI ATGAA 3 cut(s) 68, 196, 626
TspRI CASTG 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 3 cut(s) 503, 553, 779
XhoI CTCGAG 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 2 cut(s) 464, 575
Zsp2I ATGCAT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.