FvH4_6g36580
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000115
Physical Location & Seq
Reverse (-)
28796814 .. 28804452
7639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36580.t1

Sequence Viewer

Length: 747 bp
ATGATTCCACAGTCTCTTACTTGGTTCACTCATGTGGGTTGTCTCCAGAGGCCGCCATTGAAGCATCCCACAAGACGCTATGAATTCTCAGATACCCAGATCTCAGATCTTGTGCGGGGACACCCTAAACTTCTTCTTGTGGCAAATGCCCTGAAAACGCTTTTGCCAAAGCTCGAGTTTTTAAGCTCCGTAGCAAATATTAGGCTTGTTACAGAACTTGGCATGCCCTCCAATTGTATTGCCTATTTGCTAAAATTTCATACTAGAATTGTCACGAGAAAGCATGAAGAGTTCAGTCAGATTGTTAGCAATGTCAAAGGAATGGGATTCGGCCCCACAAAGATATTATTTGTGCAAGCCATGGGCGCATTATCCGTGAAGAAAACAGCATGGAGAGTTAAGGAACAGGCGTATAAGAGGATGTTACCGCTGTGTATGCTTGTTTCGGAGGAGAAAATAATGGGAGTAATGGAGTTTTTAGTGAACACGATGGGATGGAAATCAGGAGAAGTTGCAGAGTATCCGTATGTTCTTTCGTACAGCTTGGAAAAGAGAATCATCCCTAGGTGTTCGGTTATTAGAGTGTTGTTGTTGAAAGGATTGATAGAAGAGAAGGCTCTGACTTTGGCTAGTGTTTCTACGTGTCCAGAGGAGTATTTCTTAAGTAGGTTTGTCACCAGATATCTGGACCGAGTGCCTCAATTGTTGAATGTATACCAACGGAAAGTGGACGTGGAGGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

249

Amino Acids

28.44

Weight (kDa)

9.55

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 142 - 220 2.4e-14 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 714
AciI CCGC 3 cut(s) 53, 115, 428
AcsI RAATTY 2 cut(s) 83, 254
AfaI GTAC 1 cut(s) 539
AflII CTTAAG 1 cut(s) 661
AflIII ACRYGT 1 cut(s) 641
AgsI TTSAA 3 cut(s) 61, 595, 709
AjiI CACGTC 1 cut(s) 733
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 3 cut(s) 172, 186, 543
AluI AGCT 3 cut(s) 172, 186, 543
Alw26I GTCTC 2 cut(s) 18, 47
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 2 cut(s) 50, 331
ApoI RAATTY 2 cut(s) 83, 254
AspA2I CCTAGG 1 cut(s) 563
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 332, 688
AsuHPI GGTGA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 688
AvrII CCTAGG 1 cut(s) 563
BauI CACGAG 1 cut(s) 274
BccI CCATC 2 cut(s) 484, 489
BciVI GTATCC 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 18, 47
BfaI CTAG 3 cut(s) 264, 564, 630
BfrI CTTAAG 1 cut(s) 661
BfuI GTATCC 1 cut(s) 531
BglII AGATCT 2 cut(s) 99, 106
BisI GCNGC 1 cut(s) 53
BlnI CCTAGG 1 cut(s) 563
BlsI GCNGC 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 733
BmgT120I GGNCC 2 cut(s) 332, 688
BmiI GGNNCC 1 cut(s) 334
BmsI GCATC 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 642
BsaBI GATNNNNATC 1 cut(s) 499
BsaJI CCNNGG 2 cut(s) 360, 563
Bse3DI GCAATG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 499
BseDI CCNNGG 2 cut(s) 360, 563
BseGI GGATG 5 cut(s) 64, 426, 500, 558, 745
BseJI GATNNNNATC 1 cut(s) 499
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 102, 117
BseRI GAGGAG 2 cut(s) 464, 665
BshFI GGCC 2 cut(s) 52, 333
BsiHKCI CYCGRG 1 cut(s) 173
BslFI GGGAC 1 cut(s) 132
BsmAI GTCTC 2 cut(s) 18, 47
BsmFI GGGAC 1 cut(s) 132
BsnI GGCC 2 cut(s) 52, 333
BsoBI CYCGRG 1 cut(s) 173
Bsp143I GATC 2 cut(s) 99, 106
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 3 cut(s) 53, 115, 428
BspANI GGCC 2 cut(s) 52, 333
BspCNI CTCAG 2 cut(s) 101, 116
BspLI GGNNCC 1 cut(s) 334
BspTI CTTAAG 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 360, 563
BssMI GATC 2 cut(s) 99, 106
BssNAI GTATAC 1 cut(s) 715
BssSI CACGAG 1 cut(s) 274
BssT1I CCWWGG 2 cut(s) 360, 563
Bst1107I GTATAC 1 cut(s) 715
Bst2BI CACGAG 1 cut(s) 274
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 282, 603
BstAFI CTTAAG 1 cut(s) 661
BstBAI YACGTR 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 224, 357
BstDEI CTNAG 2 cut(s) 88, 103
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 5 cut(s) 64, 426, 500, 558, 745
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 2 cut(s) 102, 109
BstMAI GTCTC 2 cut(s) 18, 47
BstMBI GATC 2 cut(s) 99, 106
BstMWI GCNNNNNNNGC 3 cut(s) 61, 365, 436
BstNSI RCATGY 1 cut(s) 226
BstX2I RGATCY 2 cut(s) 99, 106
BstXI CCANNNNNNTGG 1 cut(s) 685
BstYI RGATCY 2 cut(s) 99, 106
BstZ17I GTATAC 1 cut(s) 715
BsuI GTATCC 1 cut(s) 531
BsuRI GGCC 2 cut(s) 52, 333
BtgI CCRYGG 1 cut(s) 360
BtrI CACGTC 1 cut(s) 733
BtsCI GGATG 5 cut(s) 64, 426, 500, 558, 745
Cac8I GCNNGC 2 cut(s) 224, 357
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 2 cut(s) 332, 688
CseI GACGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 538
CviAII CATG 5 cut(s) 32, 223, 284, 361, 390
CviJI RGCY 9 cut(s) 52, 172, 186, 205, 333, 359, 543, 617, 629
CviKI_1 RGCY 9 cut(s) 52, 172, 186, 205, 333, 359, 543, 617, 629
CviQI GTAC 1 cut(s) 538
DdeI CTNAG 2 cut(s) 88, 103
DpnI GATC 2 cut(s) 101, 108
DpnII GATC 2 cut(s) 99, 106
Eam1104I CTCTTC 2 cut(s) 282, 603
EarI CTCTTC 2 cut(s) 282, 603
Eco130I CCWWGG 2 cut(s) 360, 563
Eco32I GATATC 1 cut(s) 683
Eco47I GGWCC 1 cut(s) 688
Eco88I CYCGRG 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 83
EcoRV GATATC 1 cut(s) 683
EcoT14I CCWWGG 2 cut(s) 360, 563
ErhI CCWWGG 2 cut(s) 360, 563
FaeI CATG 5 cut(s) 35, 226, 287, 364, 393
FaqI GGGAC 1 cut(s) 132
FatI CATG 5 cut(s) 31, 222, 283, 360, 389
FauI CCCGC 1 cut(s) 108
FblI GTMKAC 1 cut(s) 714
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 4 cut(s) 51, 433, 507, 545
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 3 cut(s) 264, 564, 630
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 2 cut(s) 52, 333
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 368
Hin1II CATG 5 cut(s) 35, 226, 287, 364, 393
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HinfI GANTC 3 cut(s) 4, 327, 555
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 4 cut(s) 27, 484, 715, 730
Hpy188I TCNGA 5 cut(s) 91, 106, 300, 448, 621
Hpy188III TCNNGA 5 cut(s) 46, 274, 504, 647, 686
Hpy8I GTNNAC 4 cut(s) 27, 484, 715, 730
HpyAV CCTTC 1 cut(s) 607
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 2 cut(s) 641, 732
HpyCH4V TGCA 2 cut(s) 355, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 365, 436
HpyF3I CTNAG 2 cut(s) 88, 103
HpySE526I ACGT 2 cut(s) 641, 732
Hsp92II CATG 5 cut(s) 35, 226, 287, 364, 393
HspAI GCGC 1 cut(s) 366
Kzo9I GATC 2 cut(s) 99, 106
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 8 cut(s) 59, 110, 164, 392, 489, 660, 671, 691
LweI GCATC 1 cut(s) 73
MaeI CTAG 3 cut(s) 264, 564, 630
MaeII ACGT 2 cut(s) 641, 732
MaeIII GTNAC 4 cut(s) 208, 271, 423, 673
MalI GATC 2 cut(s) 101, 108
MboI GATC 2 cut(s) 99, 106
MboII GAAGA 4 cut(s) 125, 299, 391, 620
MfeI CAATTG 2 cut(s) 232, 701
MflI RGATCY 2 cut(s) 99, 106
MluCI AATT 5 cut(s) 83, 232, 254, 267, 701
MnlI CCTC 7 cut(s) 42, 238, 411, 442, 643, 708, 730
MseI TTAA 3 cut(s) 182, 399, 662
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 430
MspCI CTTAAG 1 cut(s) 661
MunI CAATTG 2 cut(s) 232, 701
MwoI GCNNNNNNNGC 3 cut(s) 61, 365, 436
NcoI CCATGG 1 cut(s) 360
NdeII GATC 2 cut(s) 99, 106
NlaIII CATG 5 cut(s) 35, 226, 287, 364, 393
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 2 cut(s) 271, 673
NspI RCATGY 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 32
PaeI GCATGC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 173
PfeI GAWTC 3 cut(s) 4, 327, 555
PkrI GCNGC 1 cut(s) 54
Ppu21I YACGTR 1 cut(s) 642
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 2 cut(s) 332, 688
PspXI VCTCGAGB 1 cut(s) 173
PsuI RGATCY 2 cut(s) 99, 106
RsaI GTAC 1 cut(s) 539
RsaNI GTAC 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 3 cut(s) 182, 399, 662
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 99, 106
Sau96I GGNCC 2 cut(s) 332, 688
SetI ASST 7 cut(s) 174, 188, 545, 569, 644, 671, 735
SfaNI GCATC 1 cut(s) 73
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 688
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 173, 661
SmoI CTYRAG 2 cut(s) 173, 661
SphI GCATGC 1 cut(s) 226
Sse9I AATT 5 cut(s) 83, 232, 254, 267, 701
SsiI CCGC 3 cut(s) 53, 115, 428
SspI AATATT 1 cut(s) 199
SspMI CTAG 3 cut(s) 264, 564, 630
StyI CCWWGG 2 cut(s) 360, 563
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 2 cut(s) 644, 735
TaqI TCGA 1 cut(s) 174
TaqII GACCGA 1 cut(s) 705
TasI AATT 5 cut(s) 83, 232, 254, 267, 701
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 3 cut(s) 4, 327, 555
Tru1I TTAA 3 cut(s) 182, 399, 662
Tru9I TTAA 3 cut(s) 182, 399, 662
TseFI GTSAC 2 cut(s) 271, 673
Tsp45I GTSAC 2 cut(s) 271, 673
TspDTI ATGAA 3 cut(s) 96, 248, 300
TspGWI ACGGA 4 cut(s) 178, 364, 513, 736
Vha464I CTTAAG 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 2 cut(s) 83, 254
XceI RCATGY 1 cut(s) 226
XhoI CTCGAG 1 cut(s) 173
XmaJI CCTAGG 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 714
XspI CTAG 3 cut(s) 264, 564, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.