MD07G1050600.v1.1
ERF Family

termination of mitochondrial transcription

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
4354876 .. 4355741
866 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1050600.v1.1.491

Sequence Viewer

Length: 585 bp
ATGTTGCCCCTTCCGCTGATTCTTTCTGCCAATCCCGAGAAAACCCTTCTGCCAAAACTTGAGTTTTTCAGCTCTCTCGGTGTTTCGAGGGTTGACCTTGCAAAAACTCTGGCTTATAATCCACATCTTTTGGGAATAAGCTTGACAAACAAGATTATGCCCACTTCTGATTTCCTAGGAGGATGGAATAGAAGTCGCGAAACTTTGAAAAGGTGGGGTTGGTCTGAGGACGATGTTCTCTCTGCTTTCAAGAAGAATCCCCAGTTTGTGATTGTGTTGGAGCAGAAGCTAATGCAAGCAATGAATTTTTTAGTGAACAAGATGGCATGGTCCTCAGAAATGATTGCCAAATACCCGGTGGTCCTCAGTCTGAGTTTGGAGAGGAGACTTATCCCGAGGTGCTCGGCAGTTAAAGTTTTATTGTTGAAAGGTTTGATAAGCAACAACTTGAATTTGGGTTCGGTGCTGAAACCTACGGATAAGCAGTTCTCGGAGATGTTTGTGAAAAGACATCTTGGCAAAGCACCTCAATTGTTGAGTGTGTATCAAGGAAAGGTGGATATCCAGGATGTATGTTCTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

195

Amino Acids

21.93

Weight (kDa)

9.76

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 5 - 163 3.5e-23 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AccII CGCG 1 cut(s) 198
AciI CCGC 1 cut(s) 14
AcsI RAATTY 2 cut(s) 304, 451
AgsI TTSAA 4 cut(s) 208, 250, 427, 451
AjnI CCWGG 1 cut(s) 564
AloI GAACNNNNNNTCC 2 cut(s) 470, 502
AluBI AGCT 3 cut(s) 72, 141, 289
AluI AGCT 3 cut(s) 72, 141, 289
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 1 cut(s) 379
Ama87I CYCGRG 2 cut(s) 35, 394
ApoI RAATTY 2 cut(s) 304, 451
AspA2I CCTAGG 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 330, 361
AsuC2I CCSGG 1 cut(s) 356
AvaI CYCGRG 2 cut(s) 35, 394
AvaII GGWCC 2 cut(s) 330, 361
AvrII CCTAGG 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 404
BccI CCATC 2 cut(s) 177, 316
BciT130I CCWGG 1 cut(s) 566
BcnI CCSGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 379
BfaI CTAG 1 cut(s) 176
BlnI CCTAGG 1 cut(s) 175
Bme1390I CCNGG 2 cut(s) 356, 566
Bme18I GGWCC 2 cut(s) 330, 361
BmeT110I CYCGRG 2 cut(s) 35, 394
BmgT120I GGNCC 2 cut(s) 330, 361
BmrFI CCNGG 2 cut(s) 356, 566
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 175, 395
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 566
BseDI CCNNGG 2 cut(s) 175, 395
BseGI GGATG 2 cut(s) 188, 574
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 4 cut(s) 216, 348, 362, 379
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 404
BsiHKCI CYCGRG 2 cut(s) 35, 394
BsiSI CCGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 379
BsoBI CYCGRG 2 cut(s) 35, 394
Bsp1286I GDGCHC 1 cut(s) 404
Bsp68I TCGCGA 1 cut(s) 198
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 4 cut(s) 217, 347, 363, 378
BspFNI CGCG 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 175, 395
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 225, 334, 365, 371
BstF5I GGATG 2 cut(s) 188, 574
BstFNI CGCG 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 379
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 354, 564
BstUI CGCG 1 cut(s) 198
BtsCI GGATG 2 cut(s) 188, 574
BtuMI TCGCGA 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 297
Cfr13I GGNCC 2 cut(s) 330, 361
CspCI CAANNNNNGTGG 2 cut(s) 111, 146
CviAII CATG 1 cut(s) 327
CviJI RGCY 4 cut(s) 72, 113, 141, 289
CviKI_1 RGCY 4 cut(s) 72, 113, 141, 289
DdeI CTNAG 4 cut(s) 225, 334, 365, 371
Eco130I CCWWGG 1 cut(s) 175
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 330, 361
Eco88I CYCGRG 2 cut(s) 35, 394
EcoRII CCWGG 1 cut(s) 564
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 330
FaiI YATR 4 cut(s) 117, 158, 328, 574
FatI CATG 1 cut(s) 326
FokI GGATG 2 cut(s) 195, 581
FspBI CTAG 1 cut(s) 176
HapII CCGG 1 cut(s) 356
Hin1II CATG 1 cut(s) 330
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 2 cut(s) 19, 256
HpaII CCGG 1 cut(s) 356
Hpy166II GTNNAC 2 cut(s) 94, 316
Hpy188I TCNGA 5 cut(s) 169, 226, 337, 372, 493
Hpy188III TCNNGA 4 cut(s) 35, 197, 250, 394
Hpy8I GTNNAC 2 cut(s) 94, 316
HpyAV CCTTC 2 cut(s) 20, 56
HpyCH4V TGCA 2 cut(s) 101, 295
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 4 cut(s) 225, 334, 365, 371
Hsp92II CATG 1 cut(s) 330
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 95, 275, 369, 551, 578
MaeI CTAG 1 cut(s) 176
MboII GAAGA 1 cut(s) 265
MfeI CAATTG 1 cut(s) 530
MhlI GDGCHC 1 cut(s) 404
MluCI AATT 3 cut(s) 304, 451, 530
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 8 cut(s) 81, 173, 220, 343, 374, 375, 390, 537
MseI TTAA 1 cut(s) 411
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 356, 566
MunI CAATTG 1 cut(s) 530
MvaI CCWGG 1 cut(s) 566
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 356
NlaIII CATG 1 cut(s) 330
NmeAIII GCCGAG 1 cut(s) 383
NruI TCGCGA 1 cut(s) 198
PfeI GAWTC 2 cut(s) 19, 256
PfoI TCCNGGA 1 cut(s) 564
PsiI TTATAA 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 564
PspGI CCWGG 1 cut(s) 564
PspPI GGNCC 2 cut(s) 330, 361
RruI TCGCGA 1 cut(s) 198
SaqAI TTAA 1 cut(s) 411
Sau96I GGNCC 2 cut(s) 330, 361
ScrFI CCNGG 2 cut(s) 356, 566
SduI GDGCHC 1 cut(s) 404
SinI GGWCC 2 cut(s) 330, 361
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 304, 451, 530
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 2 cut(s) 354, 564
StyI CCWWGG 1 cut(s) 175
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 304, 451, 530
TfiI GAWTC 2 cut(s) 19, 256
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TspDTI ATGAA 1 cut(s) 317
TspGWI ACGGA 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 330, 361
XapI RAATTY 2 cut(s) 304, 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 355
XmaJI CCTAGG 1 cut(s) 175
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.