MD03G1280700.v1.1
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000115
Physical Location & Seq
Forward (+)
36176792 .. 36177217
426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1280700.v1.1.491

Sequence Viewer

Length: 426 bp
ATGACACCCTTCAACTCTCCCACCAAAATCGCCGCCCTCCAAAGATTTGCAGTACAAAATCTATCCTTCCGCCGACGAATCGCCACCACAATCCTACCCTTTGAAAATAACCTTGAAATATCAGATTACCCATCTTACAAGTTCCTTAAAACCTTTTTGATTTCTGATCAGAGAGTGATTAGTATTCTGAAGCACAAGCCGTGGATCTTCCTCGAAAATCTGTCGAAAAATGTGGTGCCAAATATCGATCTTTTGAGAGATATTGGGATGCCGGAATCCTCCATTGCTCGGTTGCTTGCGCATTACCCCAACATTTTGATAAAAAAAAAAAAAAAGCCAGAATCGTTCAGTGGGATTGTTGCTGAGGTGAAAGATTTCGGATTAGAGCCCGCGATTTGTGCCGGCGGTGCGGGTGAGGTCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

142

Amino Acids

15.93

Weight (kDa)

9.71

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 45 - 129 1.5e-08 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 235
AccII CGCG 1 cut(s) 392
AciI CCGC 5 cut(s) 33, 70, 390, 405, 410
AclWI GGATC 1 cut(s) 212
AcuI CTGAAG 1 cut(s) 209
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 3 cut(s) 13, 104, 116
AlwI GGATC 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 2 cut(s) 379, 425
AvaII GGWCC 1 cut(s) 418
BanI GGYRCC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 363
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 184
BclI TGATCA 1 cut(s) 166
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 282
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 354
Bsh1236I CGCG 1 cut(s) 392
BshNI GGYRCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 246
BsiSI CCGG 3 cut(s) 272, 402, 421
BslI CCNNNNNNNGG 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 3 cut(s) 166, 204, 247
BspACI CCGC 5 cut(s) 33, 70, 390, 405, 410
BspCNI CTCAG 1 cut(s) 355
BspDI ATCGAT 1 cut(s) 246
BspFNI CGCG 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 282
BsrFI RCCGGY 1 cut(s) 401
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 3 cut(s) 166, 204, 247
BstC8I GCNNGC 3 cut(s) 297, 390, 403
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 273
BstFNI CGCG 1 cut(s) 392
BstHHI GCGC 1 cut(s) 301
BstKTI GATC 3 cut(s) 169, 207, 250
BstMBI GATC 3 cut(s) 166, 204, 247
BstMWI GCNNNNNNNGC 2 cut(s) 398, 407
BstUI CGCG 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 246
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 355
Cac8I GCNNGC 3 cut(s) 297, 390, 403
CfoI GCGC 1 cut(s) 301
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 418
ClaI ATCGAT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 53
CviJI RGCY 3 cut(s) 199, 337, 388
CviKI_1 RGCY 3 cut(s) 199, 337, 388
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 1 cut(s) 363
DpnI GATC 3 cut(s) 168, 206, 249
DpnII GATC 3 cut(s) 166, 204, 247
EciI GGCGGA 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 390
FauI CCCGC 2 cut(s) 397, 403
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 1 cut(s) 280
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 1 cut(s) 33
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 33
HapII CCGG 3 cut(s) 272, 402, 421
HhaI GCGC 1 cut(s) 301
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 3 cut(s) 78, 275, 341
HpaII CCGG 3 cut(s) 272, 402, 421
HphI GGTGA 2 cut(s) 379, 425
Hpy188I TCNGA 5 cut(s) 124, 166, 171, 189, 380
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 19, 76
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 407
HpyF3I CTNAG 1 cut(s) 363
HspAI GCGC 1 cut(s) 299
KroI GCCGGC 1 cut(s) 401
KroNI GCCGGC 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 3 cut(s) 166, 204, 247
LpnPI CCDG 3 cut(s) 285, 351, 415
LweI GCATC 1 cut(s) 258
MalI GATC 3 cut(s) 168, 206, 249
MboI GATC 3 cut(s) 166, 204, 247
MboII GAAGA 1 cut(s) 199
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 390
MnlI CCTC 5 cut(s) 47, 221, 289, 358, 409
MroNI GCCGGC 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 1 cut(s) 147
MspI CCGG 3 cut(s) 272, 402, 421
MvnI CGCG 1 cut(s) 392
MwoI GCNNNNNNNGC 2 cut(s) 398, 407
NaeI GCCGGC 1 cut(s) 403
NdeII GATC 3 cut(s) 166, 204, 247
NgoMIV GCCGGC 1 cut(s) 401
NlaIV GGNNCC 1 cut(s) 237
NsbI TGCGCA 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 78, 275, 341
PkrI GCNGC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 3 cut(s) 166, 204, 247
Sau96I GGNCC 1 cut(s) 418
SduI GDGCHC 1 cut(s) 390
SetI ASST 4 cut(s) 114, 155, 369, 420
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 418
SsiI CCGC 5 cut(s) 33, 70, 390, 405, 410
TaqI TCGA 3 cut(s) 213, 224, 246
TatI WGTACW 1 cut(s) 52
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 3 cut(s) 78, 275, 341
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 355
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.