MD02G1280500.v1.1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0000115
Physical Location & Seq
Reverse (-)
33659245 .. 33660238
994 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1280500.v1.1.491

Sequence Viewer

Length: 834 bp
ATGTGGGCTATCCCCAGAAGGAAGCACTCTCCAGTTCTTAACTCCAATCCGGAGAAAACCCTTTTGCCAAAGCTTGAGTTTTTCGCTTCTCTTGGACTTTCAGAGGGGGACCTTGCAAAAACTCTCGCATATGAACCAAATCTTTTGTTTACGAGCTTGGAGAAACGGATTGCACCCACTTATGATTTCCTTAGGAGTCTGCTTTCTCAGAAAAATGTCGTTTCCGTTTTAAGGTGCGGCTCGTGGATTTTCACTGAAGGCCACTCCAAGAAGGTGGCGCCAAATATTGAGGTTTTGAGAGATTCTGGTATTCCCCAATCCTGCATTTCTGTGTTGCTTGCTTATCACCCCAAGGTTTTTATGCGAAAGCCTAAAGAGCTTGGTGAACTTGTGGATGAGGTTAAGCAAATGGGTTTTAATCTGCAAAAATCAAATTCGGTAATCGCAATATACGCATTGTGTGGTAACAATAGGTCTGTATGGAATCGAAGTCGCCAACTTTATAAGAGGTGGGGTTGGTCTGAGGATGATGTTCTCTCTGCTTTTAGGCGGAACCCGCGCTGTATGACTATGTCGGAGAACAAACTAATGCTAGCAATGGATTTTTTAGTGAACGAGATGGGGTGTTTGGAGAAGAGATTGGTTCCAAGGTGTTCGGTTGCTAAAGTTTTGTTGTTGAGAGGATTGATAAAGGGGATTGAAAATGTGAGTTTAAGTTCTTTGTTAGAGCCTGTGGAAAAGTGCTTCTTGGAGAGGTTTGTAGCCAGATATATAAATGAAGTACCTCAGTTATTGAGTGTGTATCAAGGAAAAGTTGGAATCCAGGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

278

Amino Acids

31.55

Weight (kDa)

9.44

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 11 - 205 2.6e-21 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 277
AccII CGCG 1 cut(s) 559
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 3 cut(s) 237, 550, 557
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 1 cut(s) 783
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 701
AjnI CCWGG 1 cut(s) 822
AluBI AGCT 3 cut(s) 73, 156, 379
AluI AGCT 3 cut(s) 73, 156, 379
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 1 cut(s) 259
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 2 cut(s) 280, 561
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 338, 395
AsuNHI GCTAGC 1 cut(s) 592
AvaII GGWCC 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 191
BanI GGYRCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 241
BccI CCATC 1 cut(s) 613
BciT130I CCWGG 1 cut(s) 824
BfaI CTAG 1 cut(s) 593
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 824
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 4 cut(s) 110, 279, 554, 645
BmrFI CCNGG 1 cut(s) 824
BmtI GCTAGC 1 cut(s) 596
BpmI CTGGAG 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 351, 647
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 32
Bse21I CCTNAGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 824
BseDI CCNNGG 2 cut(s) 351, 647
BseGI GGATG 3 cut(s) 400, 532, 832
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 3 cut(s) 221, 513, 800
BseNI ACTGG 1 cut(s) 32
Bsh1236I CGCG 1 cut(s) 559
BshFI GGCC 1 cut(s) 261
BshNI GGYRCC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 231
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 261
Bsp13I TCCGGA 1 cut(s) 49
BspACI CCGC 3 cut(s) 237, 550, 557
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 3 cut(s) 220, 514, 799
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 559
BspLI GGNNCC 4 cut(s) 110, 279, 554, 645
BspOI GCTAGC 1 cut(s) 596
BspT107I GGYRCC 1 cut(s) 277
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 351, 647
BssNI GRCGYC 1 cut(s) 278
BssSI CACGAG 1 cut(s) 241
BssT1I CCWWGG 2 cut(s) 351, 647
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 824
Bst6I CTCTTC 1 cut(s) 629
BstACI GRCGYC 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 339, 594
BstDEI CTNAG 4 cut(s) 191, 207, 522, 786
BstF5I GGATG 3 cut(s) 400, 532, 832
BstFNI CGCG 1 cut(s) 559
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 280, 561
BstMWI GCNNNNNNNGC 3 cut(s) 376, 452, 556
BstNI CCWGG 1 cut(s) 824
BstSCI CCNGG 1 cut(s) 822
BstUI CGCG 1 cut(s) 559
BstXI CCANNNNNNTGG 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 3 cut(s) 400, 532, 832
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 2 cut(s) 339, 594
CfoI GCGC 2 cut(s) 280, 561
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 782
CviJI RGCY 9 cut(s) 8, 73, 156, 240, 261, 370, 379, 730, 764
CviKI_1 RGCY 9 cut(s) 8, 73, 156, 240, 261, 370, 379, 730, 764
CviQI GTAC 1 cut(s) 782
DdeI CTNAG 4 cut(s) 191, 207, 522, 786
DinI GGCGCC 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
EciI GGCGGA 1 cut(s) 565
Eco130I CCWWGG 2 cut(s) 351, 647
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 822
EcoT14I CCWWGG 2 cut(s) 351, 647
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 351, 647
FalI AAGNNNNNCTT 2 cut(s) 731, 763
FaqI GGGAC 1 cut(s) 122
FauI CCCGC 1 cut(s) 564
FauNDI CATATG 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 2 cut(s) 407, 539
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 593
GlaI GCGC 2 cut(s) 279, 560
GluI GCNGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 261
HapII CCGG 1 cut(s) 50
HhaI GCGC 2 cut(s) 280, 561
Hin1I GRCGYC 1 cut(s) 278
Hin6I GCGC 2 cut(s) 278, 559
HinP1I GCGC 2 cut(s) 278, 559
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 4 cut(s) 196, 302, 484, 819
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 338, 395
Hpy166II GTNNAC 3 cut(s) 150, 386, 613
Hpy188I TCNGA 4 cut(s) 103, 210, 523, 577
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 3 cut(s) 150, 386, 613
HpyAV CCTTC 3 cut(s) 12, 251, 265
HpyCH4V TGCA 4 cut(s) 116, 173, 324, 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 376, 452, 556
HpyF3I CTNAG 4 cut(s) 191, 207, 522, 786
Hsp92I GRCGYC 1 cut(s) 278
HspAI GCGC 2 cut(s) 278, 559
KasI GGCGCC 1 cut(s) 277
Kpn2I TCCGGA 1 cut(s) 49
LpnPI CCDG 8 cut(s) 28, 45, 63, 291, 334, 744, 778, 809
MaeI CTAG 1 cut(s) 593
MaeIII GTNAC 1 cut(s) 464
MboII GAAGA 1 cut(s) 646
MluCI AATT 1 cut(s) 433
Mly113I GGCGCC 1 cut(s) 278
MlyI GAGTC 1 cut(s) 205
MmeI TCCRAC 2 cut(s) 555, 796
MnlI CCTC 8 cut(s) 97, 283, 391, 501, 517, 674, 747, 795
MroI TCCGGA 1 cut(s) 49
MseI TTAA 5 cut(s) 39, 230, 402, 417, 713
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 824
MvaI CCWGG 1 cut(s) 824
MvnI CGCG 1 cut(s) 559
MwoI GCNNNNNNNGC 3 cut(s) 376, 452, 556
NarI GGCGCC 1 cut(s) 278
NdeI CATATG 1 cut(s) 130
NheI GCTAGC 1 cut(s) 592
NlaIV GGNNCC 4 cut(s) 110, 279, 554, 645
PfeI GAWTC 3 cut(s) 302, 484, 819
PflFI GACNNNGTC 1 cut(s) 571
PfoI TCCNGGA 1 cut(s) 822
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 1 cut(s) 204
PluTI GGCGCC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 204
PpuMI RGGWCCY 1 cut(s) 109
PsiI TTATAA 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 822
PspGI CCWGG 1 cut(s) 822
PspN4I GGNNCC 4 cut(s) 110, 279, 554, 645
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 571
RsaI GTAC 1 cut(s) 783
RsaNI GTAC 1 cut(s) 782
RseI CAYNNNNRTG 1 cut(s) 329
SaqAI TTAA 5 cut(s) 39, 230, 402, 417, 713
SatI GCNGC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 205
ScrFI CCNGG 1 cut(s) 824
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 433
SsiI CCGC 3 cut(s) 237, 550, 557
SspDI GGCGCC 1 cut(s) 277
SspI AATATT 1 cut(s) 286
SspMI CTAG 1 cut(s) 593
StyD4I CCNGG 1 cut(s) 822
StyI CCWWGG 2 cut(s) 351, 647
TaqI TCGA 1 cut(s) 487
TasI AATT 1 cut(s) 433
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 3 cut(s) 302, 484, 819
Tru1I TTAA 5 cut(s) 39, 230, 402, 417, 713
Tru9I TTAA 5 cut(s) 39, 230, 402, 417, 713
TscAI CASTG 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 147, 792
TspGWI ACGGA 2 cut(s) 181, 214
TspRI CASTG 1 cut(s) 259
Tth111I GACNNNGTC 1 cut(s) 571
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 1 cut(s) 433
XspI CTAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.