pycom07g03490
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000115
Physical Location & Seq
Reverse (-)
2874006 .. 2874502
497 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03490.2

Sequence Viewer

Length: 456 bp
ATGGCAGCCCTCTTCAACCTGAAGGCCGGCGGATTGGGGTATTCACTATTTTCCAAAACTACAAGATTTGTTGTTGGAGATGTAAAACCTTCACATTTTACTCTTCAAAACCAGATACTTTGCAGACGTTTCACCTCGGAAATCTCAGAAAACCACCACGATTTCACAGTCAATTACCTCATTAATTCATGTGGGTTGTCTCCACAAGGTGCAATTTCAGCTTCTAAGCGGGTCAAGATGCGATCCCCCGAAAGAGCAGACTCCGTTCTGTCCTTTCTCAGAAGCCATGGAGTCTCTGCAACCCAAATCTCCAAGATTGTCAGGTCGTGCCCAGGACTTCTCAATTGGAATCCGGAGAAAACCCTTTTGCCAAAGCTTGAATTTTTCATTTCTCTTGGAGTTTCAAGGGAGGACCTTCTTGGAGAAACGGATTCTACCAACTTGCCAGTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

152

Amino Acids

16.65

Weight (kDa)

9.37

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 2 cut(s) 30, 229
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 41
AdeI CACNNNGTG 1 cut(s) 209
AgsI TTSAA 4 cut(s) 16, 107, 380, 405
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 221, 376
AluI AGCT 2 cut(s) 221, 376
Alw26I GTCTC 2 cut(s) 204, 298
AlwI GGATC 1 cut(s) 237
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 380
AseI ATTAAT 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 1 cut(s) 412
BaeGI GKGCMC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 2 cut(s) 204, 298
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 412
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 135, 286, 331
BsaWI WCCGGW 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 446
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 3 cut(s) 135, 286, 331
BseMII CTCAG 2 cut(s) 159, 292
BseNI ACTGG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 2 cut(s) 27, 353
BsmAI GTCTC 2 cut(s) 204, 298
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 332
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 2 cut(s) 30, 229
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 158, 291
BspEI TCCGGA 1 cut(s) 352
BspPI GGATC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 1 cut(s) 446
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 3 cut(s) 135, 286, 331
BssMI GATC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 17, 108
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 4 cut(s) 145, 225, 278, 453
BstDSI CCRYGG 1 cut(s) 286
BstKTI GATC 1 cut(s) 245
BstMAI GTCTC 2 cut(s) 204, 298
BstMBI GATC 1 cut(s) 242
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNI CCWGG 1 cut(s) 333
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 412
CviAII CATG 2 cut(s) 189, 287
CviJI RGCY 5 cut(s) 8, 26, 221, 285, 376
CviKI_1 RGCY 5 cut(s) 8, 26, 221, 285, 376
DdeI CTNAG 4 cut(s) 145, 225, 278, 453
DpnI GATC 1 cut(s) 244
DpnII GATC 1 cut(s) 242
DraIII CACNNNGTG 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 17, 108
EarI CTCTTC 2 cut(s) 17, 108
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 192, 290
FaiI YATR 2 cut(s) 190, 288
FatI CATG 2 cut(s) 188, 286
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 26
HapII CCGG 2 cut(s) 27, 353
Hin1II CATG 2 cut(s) 192, 290
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 4 cut(s) 260, 291, 349, 431
HpaII CCGG 2 cut(s) 27, 353
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 139, 148, 281
Hpy188III TCNNGA 2 cut(s) 235, 353
HpyAV CCTTC 3 cut(s) 16, 99, 425
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 123, 212, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 4 cut(s) 145, 225, 278, 453
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 2 cut(s) 192, 290
Kpn2I TCCGGA 1 cut(s) 352
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 242
LpnPI CCDG 7 cut(s) 32, 40, 125, 307, 318, 345, 366
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 228
MaeII ACGT 1 cut(s) 127
MalI GATC 1 cut(s) 244
MboI GATC 1 cut(s) 242
MboII GAAGA 2 cut(s) 4, 95
MfeI CAATTG 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 5 cut(s) 172, 184, 213, 343, 380
MlyI GAGTC 2 cut(s) 254, 300
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 4 cut(s) 20, 145, 188, 403
MroI TCCGGA 1 cut(s) 352
MroNI GCCGGC 1 cut(s) 26
MseI TTAA 1 cut(s) 183
MspI CCGG 2 cut(s) 27, 353
MspR9I CCNGG 1 cut(s) 333
MunI CAATTG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 218
NaeI GCCGGC 1 cut(s) 28
NcoI CCATGG 1 cut(s) 286
NdeII GATC 1 cut(s) 242
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 2 cut(s) 192, 290
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 349, 431
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 254, 299
PpsI GAGTC 2 cut(s) 254, 299
PpuMI RGGWCCY 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspPI GGNCC 1 cut(s) 412
PspPPI RGGWCCY 1 cut(s) 412
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 242
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 2 cut(s) 254, 300
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 332
SfaNI GCATC 1 cut(s) 228
SinI GGWCC 1 cut(s) 412
Sse9I AATT 5 cut(s) 172, 184, 213, 343, 380
SsiI CCGC 2 cut(s) 30, 229
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 130
TasI AATT 5 cut(s) 172, 184, 213, 343, 380
TfiI GAWTC 2 cut(s) 349, 431
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 177, 376
TspGWI ACGGA 2 cut(s) 253, 443
VpaK11BI GGWCC 1 cut(s) 412
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.