pycom07g03440
ERF Family

Mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
2820625 .. 2821095
471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03440.1

Sequence Viewer

Length: 471 bp
ATGGGTTTTGACTTGGGAAAAGTAACTTTTCTGACGGCAATGCGTGCATTGTGTGGTAAAAGTAAGGTTAGATGCAATAGAAATCAAGAAGTTTATAAGAGTTGGGGTTGGTCGGAGGATGATGCTCTCACTGCTTTCAGGAAGAACCCGCAGTGCATGATTACGTCGGAGGAGAAAATAATGCAAGTAATGGATTTTTTAGTGAACAAGATGGGATGGCGGTCAACTGCAATTGCCAAATACCCAATAGTCGTCTGTTACAGTTTGGAAAAGAGAATTATCCCGAGGTGTTCAGTTGTTAAAGTTTTGTTGGCGAAAGGATTGATAAAGGAAATCGATAATGTGAGTTTGTGTACTCTGTTGACCCCTGCGGAGGAAGGCTTCTTGGAGAAGTTTGTGGCCAGATATATAGATGAAGTACCTCAGTTATTGAGTGTGTATCAAGGAAAAGTTGAACTCCAGGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.78

Weight (kDa)

8.72

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 27 - 128 2.8e-17 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 96
AciI CCGC 3 cut(s) 149, 220, 371
AcoI YGGCCR 1 cut(s) 399
AfaI GTAC 2 cut(s) 355, 420
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 1 cut(s) 455
AjnI CCWGG 1 cut(s) 459
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 1 cut(s) 399
AvaI CYCGRG 1 cut(s) 283
BalI TGGCCA 1 cut(s) 401
BccI CCATC 2 cut(s) 205, 210
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 2 cut(s) 62, 112
BpmI CTGGAG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 461
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 3 cut(s) 124, 221, 469
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 437
BseRI GAGGAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 401
BshVI ATCGAT 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 373
BsnI GGCC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 283
BspACI CCGC 3 cut(s) 149, 220, 371
BspANI GGCC 1 cut(s) 401
BspCNI CTCAG 1 cut(s) 436
BspDI ATCGAT 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 284
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 423
BstF5I GGATG 3 cut(s) 124, 221, 469
BstMWI GCNNNNNNNGC 2 cut(s) 44, 131
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 1 cut(s) 401
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 3 cut(s) 124, 221, 469
BtsI GCAGTG 2 cut(s) 129, 158
BtsIMutI CAGTG 2 cut(s) 129, 158
Cac8I GCNNGC 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 2 cut(s) 354, 419
CviAII CATG 1 cut(s) 157
CviJI RGCY 2 cut(s) 381, 401
CviKI_1 RGCY 2 cut(s) 381, 401
CviQI GTAC 2 cut(s) 354, 419
DdeI CTNAG 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 459
FaeI CATG 1 cut(s) 160
FaiI YATR 5 cut(s) 96, 158, 408, 410, 469
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 156
FokI GGATG 2 cut(s) 131, 228
GsuI CTGGAG 1 cut(s) 443
HaeIII GGCC 1 cut(s) 401
Hin1II CATG 1 cut(s) 160
HincII GTYRAC 2 cut(s) 225, 363
HindII GTYRAC 2 cut(s) 225, 363
Hpy166II GTNNAC 4 cut(s) 205, 225, 354, 363
Hpy188I TCNGA 3 cut(s) 33, 115, 169
Hpy188III TCNNGA 3 cut(s) 86, 139, 283
Hpy8I GTNNAC 4 cut(s) 205, 225, 354, 363
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 5 cut(s) 47, 75, 156, 184, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 131
HpyF3I CTNAG 1 cut(s) 423
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 1 cut(s) 160
LpnPI CCDG 4 cut(s) 124, 381, 415, 446
LweI GCATC 2 cut(s) 62, 112
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 22, 257
MboII GAAGA 1 cut(s) 154
MfeI CAATTG 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 401
MluCI AATT 2 cut(s) 231, 276
MluNI TGGCCA 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 93, 147
MnlI CCTC 5 cut(s) 109, 163, 279, 367, 432
Mox20I TGGCCA 1 cut(s) 401
MscI TGGCCA 1 cut(s) 401
MseI TTAA 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 461
MunI CAATTG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 44, 131
NlaIII CATG 1 cut(s) 160
PfoI TCCNGGA 1 cut(s) 459
PsiI TTATAA 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
RsaI GTAC 2 cut(s) 355, 420
RsaNI GTAC 2 cut(s) 354, 419
SaqAI TTAA 1 cut(s) 300
ScrFI CCNGG 1 cut(s) 461
SetI ASST 4 cut(s) 69, 167, 290, 424
SfaNI GCATC 2 cut(s) 62, 112
Sse9I AATT 2 cut(s) 231, 276
SsiI CCGC 3 cut(s) 149, 220, 371
StyD4I CCNGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 336
TasI AATT 2 cut(s) 231, 276
TatI WGTACW 1 cut(s) 353
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 136, 158
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 2 cut(s) 136, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.