Rmu_sc0014786.1_g000001
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014786.1
OG0000115
Physical Location & Seq
Reverse (-)
1618 .. 2139
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014786.1_g000001.1.cds

Sequence Viewer

Length: 522 bp
atgtgcgctttacctagaagccgccattgtagcatccccaaggtaaagcttcttcaatctttagtaaaaccagactccgttttagcccttttgagagactacggattctcagaaacccagatctcaactcttgtgcggaaatacccccaattcttttggccaatgtggagcaaaccctttgcaaagcttgagtttttctgctccataggaattttgaggctcgacctagcaaacactgtgagctacgacccatcgctcctggcgcgaagcttgaagaacgtgatcatacccaattataacttcgtcaaagagcgtggtgctctttggtgtcaaggttctgaatatcttgaagcacaagtcattttccaggaaaacctatccaagaaagtgatacacaatattgagcttgtgagggaattgagcatgccccagtcttgtattgcccatttggtaacatattatactggtattgtgatgaggaagcctgaattgttcagtcaacttgtgggtgaggtcaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

173

Amino Acids

19.92

Weight (kDa)

9.24

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AccII CGCG 1 cut(s) 265
AciI CCGC 2 cut(s) 22, 136
AcoI YGGCCR 1 cut(s) 158
AcsI RAATTY 1 cut(s) 210
AgsI TTSAA 3 cut(s) 56, 274, 350
AjnI CCWGG 2 cut(s) 258, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 284, 316
AluBI AGCT 5 cut(s) 49, 187, 243, 270, 406
AluI AGCT 5 cut(s) 49, 187, 243, 270, 406
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 210
AspLEI GCGC 2 cut(s) 8, 265
AsuHPI GGTGA 1 cut(s) 521
BalI TGGCCA 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
Bbv12I GWGCWC 1 cut(s) 322
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 260, 368
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 2 cut(s) 15, 227
BglII AGATCT 1 cut(s) 120
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 260, 368
BmrFI CCNGG 2 cut(s) 260, 368
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 1 cut(s) 42
BmuI ACTGGG 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 430, 469
BseBI CCWGG 2 cut(s) 260, 368
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 2 cut(s) 430, 469
Bsh1236I CGCG 1 cut(s) 265
BshFI GGCC 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 2 cut(s) 120, 282
BspACI CCGC 2 cut(s) 22, 136
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 1 cut(s) 265
BsrI ACTGG 2 cut(s) 430, 469
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 120, 282
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 260, 368
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 425
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 265
BstHHI GCGC 2 cut(s) 8, 265
BstKTI GATC 2 cut(s) 123, 285
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 120, 282
BstMWI GCNNNNNNNGC 2 cut(s) 30, 262
BstNI CCWGG 2 cut(s) 260, 368
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 258, 366
BstUI CGCG 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 160
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 1 cut(s) 425
CfoI GCGC 2 cut(s) 8, 265
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 1 cut(s) 424
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 122, 284
DpnII GATC 2 cut(s) 120, 282
EaeI YGGCCR 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 258, 366
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 427
FaiI YATR 6 cut(s) 206, 287, 297, 425, 457, 462
FatI CATG 1 cut(s) 423
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 2 cut(s) 15, 227
GlaI GCGC 2 cut(s) 7, 264
GluI GCNGC 1 cut(s) 22
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 2 cut(s) 8, 265
Hin1II CATG 1 cut(s) 427
Hin6I GCGC 2 cut(s) 6, 263
HinP1I GCGC 2 cut(s) 6, 263
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HindIII AAGCTT 3 cut(s) 47, 185, 268
HinfI GANTC 2 cut(s) 74, 105
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 2 cut(s) 112, 340
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 1 cut(s) 500
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 262
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 427
HspAI GCGC 2 cut(s) 6, 263
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 2 cut(s) 120, 282
LmnI GCTCC 3 cut(s) 168, 206, 261
LpnPI CCDG 9 cut(s) 84, 131, 245, 272, 353, 380, 443, 450, 498
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 15, 227
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 122, 284
MboI GATC 2 cut(s) 120, 282
MboII GAAGA 2 cut(s) 44, 286
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 322
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 5 cut(s) 149, 210, 292, 416, 488
MluNI TGGCCA 1 cut(s) 160
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 210, 405, 471, 505
Mox20I TGGCCA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 260, 368
MvaI CCWGG 2 cut(s) 260, 368
MvnI CGCG 1 cut(s) 265
MwoI GCNNNNNNNGC 2 cut(s) 30, 262
NdeII GATC 2 cut(s) 120, 282
NlaIII CATG 1 cut(s) 427
NspI RCATGY 1 cut(s) 427
PaeI GCATGC 1 cut(s) 427
PfeI GAWTC 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PsiI TTATAA 1 cut(s) 297
Psp6I CCWGG 2 cut(s) 258, 366
PspGI CCWGG 2 cut(s) 258, 366
PsuI RGATCY 1 cut(s) 120
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 2 cut(s) 120, 282
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 260, 368
SduI GDGCHC 1 cut(s) 322
SfaNI GCATC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SphI GCATGC 1 cut(s) 427
Sse9I AATT 5 cut(s) 149, 210, 292, 416, 488
SsiI CCGC 2 cut(s) 22, 136
SspI AATATT 1 cut(s) 400
SspMI CTAG 2 cut(s) 15, 227
StyD4I CCNGG 2 cut(s) 258, 366
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 222
TasI AATT 5 cut(s) 149, 210, 292, 416, 488
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 1 cut(s) 105
TscAI CASTG 1 cut(s) 241
TspGWI ACGGA 2 cut(s) 67, 117
TspRI CASTG 1 cut(s) 241
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 427
XspI CTAG 2 cut(s) 15, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.