Rh6BG352600
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
58374834 .. 58375487
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG352600.1

Sequence Viewer

Length: 654 bp
ATGATTTTACAGTCTCCTACCTGGTTAACTCATGTGGGCTTTTCCCCAGAAGCCGCCATTGTAGCATCCCACAAGGTAAAGCTTCAATCTTTAGTAAAACCAGACTCTGTGTTAGCCCTTTTGAGGGAGTATGAATTCTCAGGCACCCAGATTTCAACTCTTGTGCGGAGACACCCTAGAATTCTGTTGGCCGATGCCAAGAAAACTCTTGCGCCGAAGCTTGAGTTCTTCTGCTCCGTAGGAATGTCAAGGCTCGACCTTGCAAAAACTGTGACCCACAGCCAATCGATCTTGGACCGAAGCTTAGAAAACCATATTGTGCCCTCTTTTAATTTGCTCAAGGATGTGGTGCACTCTGATGTCAAGGTCCTCGGTATTTTGAAGTGCAACCCATGGATTTTCAGGCAAAAGCTATCCAAGACTATGATGCCCAATATTGAGCTTCTGAGAGCATTAGGCATGCCCCAGTCGTCTATCGCTAGGTTGATAACATATTATGTTCGGATTGTGATGAAAGAGCCTGAATCGTTCAGTCAACTTGTGGGTGAAGTCGAACAATTGGGATTCGACCTTAGAAAGACGTTCTTTGTGCAAGCCATGCTCGCATTATCTGGGAAGAACAAGACGACATGGAAGCGAAATGAAGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

217

Amino Acids

24.57

Weight (kDa)

9.75

Isoelectric Point (pI)

58.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 38 - 194 5.1e-23 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 2 cut(s) 54, 166
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 2 cut(s) 134, 180
AfiI CCNNNNNNNGG 2 cut(s) 123, 124
AgsI TTSAA 3 cut(s) 86, 156, 382
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 5 cut(s) 82, 220, 303, 412, 442
AluI AGCT 5 cut(s) 82, 220, 303, 412, 442
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 18, 163
Alw44I GTGCAC 1 cut(s) 350
AlwNI CAGNNNCTG 1 cut(s) 107
AoxI GGCC 1 cut(s) 189
ApaLI GTGCAC 1 cut(s) 350
ApoI RAATTY 2 cut(s) 134, 180
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 295, 367
AsuHPI GGTGA 1 cut(s) 557
AvaII GGWCC 2 cut(s) 295, 367
BaeGI GKGCMC 2 cut(s) 324, 354
BanI GGYRCC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 354
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 18, 163
BfaI CTAG 2 cut(s) 177, 480
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 2 cut(s) 295, 367
BmgT120I GGNCC 2 cut(s) 295, 367
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 22
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 74, 184, 417
BmuI ACTGGG 1 cut(s) 460
BpuEI CTTGAG 2 cut(s) 242, 323
Bsa29I ATCGAT 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 370, 392
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 124
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 370, 392
BseGI GGATG 2 cut(s) 65, 349
BseLI CCNNNNNNNGG 2 cut(s) 123, 124
BseMII CTCAG 2 cut(s) 153, 437
BseNI ACTGG 1 cut(s) 466
BseSI GKGCMC 2 cut(s) 324, 354
BshFI GGCC 1 cut(s) 191
BshNI GGYRCC 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 287
BsiHKAI GWGCWC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 123, 124
BsmAI GTCTC 2 cut(s) 18, 163
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 324, 354
Bsp143I GATC 1 cut(s) 288
Bsp19I CCATGG 1 cut(s) 392
BspACI CCGC 2 cut(s) 54, 166
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 152, 438
BspDI ATCGAT 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 145
BspT107I GGYRCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 370, 392
BssMI GATC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 12, 271
Bst6I CTCTTC 1 cut(s) 639
BstAPI GCANNNNNTGC 1 cut(s) 598
BstC8I GCNNGC 3 cut(s) 461, 594, 603
BstDEI CTNAG 5 cut(s) 139, 304, 446, 572, 651
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 2 cut(s) 65, 349
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 291
BstMAI GTCTC 2 cut(s) 18, 163
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 3 cut(s) 62, 598, 602
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 20
BstSLI GKGCMC 2 cut(s) 324, 354
Bsu15I ATCGAT 1 cut(s) 287
BsuRI GGCC 1 cut(s) 191
BsuTUI ATCGAT 1 cut(s) 287
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 2 cut(s) 65, 349
Cac8I GCNNGC 3 cut(s) 461, 594, 603
CaiI CAGNNNCTG 1 cut(s) 107
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 295, 367
ClaI ATCGAT 1 cut(s) 287
CsiI ACCWGGT 1 cut(s) 20
CviAII CATG 5 cut(s) 32, 393, 460, 598, 630
DdeI CTNAG 5 cut(s) 139, 304, 446, 572, 651
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 392
Eco47I GGWCC 2 cut(s) 295, 367
EcoO109I RGGNCCY 1 cut(s) 367
EcoRI GAATTC 2 cut(s) 134, 180
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 5 cut(s) 35, 396, 463, 601, 633
FalI AAGNNNNNCTT 2 cut(s) 569, 601
FatI CATG 5 cut(s) 31, 392, 459, 597, 629
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 2 cut(s) 52, 356
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 2 cut(s) 177, 480
GlaI GCGC 1 cut(s) 213
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 191
HhaI GCGC 1 cut(s) 214
Hin1II CATG 5 cut(s) 35, 396, 463, 601, 633
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 2 cut(s) 27, 536
HindII GTYRAC 2 cut(s) 27, 536
HindIII AAGCTT 3 cut(s) 80, 218, 301
HinfI GANTC 3 cut(s) 104, 524, 564
HpaI GTTAAC 1 cut(s) 27
HphI GGTGA 1 cut(s) 557
Hpy166II GTNNAC 3 cut(s) 27, 352, 536
Hpy188I TCNGA 3 cut(s) 358, 447, 504
Hpy8I GTNNAC 3 cut(s) 27, 352, 536
HpyCH4III ACNGT 2 cut(s) 12, 271
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 4 cut(s) 263, 352, 387, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 598, 602
HpyF3I CTNAG 5 cut(s) 139, 304, 446, 572, 651
HpySE526I ACGT 1 cut(s) 581
Hsp92II CATG 5 cut(s) 35, 396, 463, 601, 633
HspAI GCGC 1 cut(s) 212
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 239
LweI GCATC 3 cut(s) 74, 184, 417
MabI ACCWGGT 1 cut(s) 20
MaeI CTAG 2 cut(s) 177, 480
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 1 cut(s) 271
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 2 cut(s) 220, 628
MfeI CAATTG 1 cut(s) 557
MhlI GDGCHC 2 cut(s) 324, 354
MluCI AATT 4 cut(s) 134, 180, 331, 557
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 117, 334, 380, 640
MseI TTAA 2 cut(s) 26, 330
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 62, 598, 602
NcoI CCATGG 1 cut(s) 392
NdeII GATC 1 cut(s) 288
NlaIII CATG 5 cut(s) 35, 396, 463, 601, 633
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 463
PaeI GCATGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 524, 564
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 295, 367
PspPPI RGGWCCY 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 2 cut(s) 26, 330
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 2 cut(s) 295, 367
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 2 cut(s) 324, 354
SexAI ACCWGGT 1 cut(s) 20
SfaNI GCATC 3 cut(s) 74, 184, 417
SinI GGWCC 2 cut(s) 295, 367
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 221, 338
SmoI CTYRAG 2 cut(s) 221, 338
SphI GCATGC 1 cut(s) 463
Sse9I AATT 4 cut(s) 134, 180, 331, 557
SsiI CCGC 2 cut(s) 54, 166
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 177, 480
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 2 cut(s) 12, 271
TaiI ACGT 1 cut(s) 584
TaqI TCGA 4 cut(s) 255, 287, 552, 567
TaqII GACCGA 1 cut(s) 312
TasI AATT 4 cut(s) 134, 180, 331, 557
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 524, 564
Tru1I TTAA 2 cut(s) 26, 330
Tru9I TTAA 2 cut(s) 26, 330
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 2 cut(s) 147, 527
TspGWI ACGGA 1 cut(s) 226
VneI GTGCAC 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 295, 367
XapI RAATTY 2 cut(s) 134, 180
XceI RCATGY 1 cut(s) 463
XspI CTAG 2 cut(s) 177, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.