Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000115

Physical Location & Seq

Genomic Coordinates Forward (+)

58375548 .. 58375859

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG352700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACCAAGTCTGAGAAGAAACTAATGGGAACAATGGATTTCTTAGTGAACAAGATGGGATGGCATTCCCAGAAGATTGCAAAATGTCCCCATGTTTTGTGTTTCAGTTTTGAGAAGAGAATCATCCCAAGGTTTTCGGTTGTTAAAGTTTTGATGTTGAAAGGACTGGTAGAAGGGGAAAAGTTGAGTTTGTCTACTATTGTTGCGATTCCAGAAAACTACTTCTTGAATAAGTTTGTGACCACTAATCTGCGCCTAGTACCTGAATTGTTAAATGTGTACCACGGCAAAGTGGATGTGCAGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

mTERF

Protein Analysis

103

Amino Acids

11.81

Weight (kDa)

9.52

Isoelectric Point (pI)

23.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	4 - 75	5.3e-12	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07900
fragaria_vesca	FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica	MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica	Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis	pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis	RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata	RLG00000011974 RLG00000015894
rosa_multiflora	Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii	Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa	Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha	Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana	Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	261, 281
AgsI	TTSAA	2 cut(s)	160, 229
AspLEI	GCGC	1 cut(s)	255
BccI	CCATC	2 cut(s)	49, 54
BceAI	ACGGC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	128, 283
Bse1I	ACTGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	128, 283
BseGI	GGATG	4 cut(s)	65, 123, 301, 310
BseNI	ACTGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	128, 283
BssT1I	CCWWGG	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	12, 43
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	4 cut(s)	65, 123, 301, 310
BstHHI	GCGC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	65, 123, 301, 310
CfoI	GCGC	1 cut(s)	255
Csp6I	GTAC	2 cut(s)	260, 280
CviAII	CATG	1 cut(s)	92
CviQI	GTAC	2 cut(s)	260, 280
DdeI	CTNAG	2 cut(s)	12, 43
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	95
FaiI	YATR	1 cut(s)	93
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	194
FokI	GGATG	3 cut(s)	72, 110, 308
FspBI	CTAG	1 cut(s)	257
GlaI	GCGC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	2 cut(s)	120, 208
Hpy166II	GTNNAC	3 cut(s)	49, 195, 280
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	212, 226
Hpy8I	GTNNAC	3 cut(s)	49, 195, 280
HpyAV	CCTTC	1 cut(s)	167
HpyCH4V	TGCA	2 cut(s)	80, 301
HpyF3I	CTNAG	2 cut(s)	12, 43
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	253
LpnPI	CCDG	5 cut(s)	83, 152, 225, 276, 287
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	28, 85, 127
MluCI	AATT	1 cut(s)	266
MseI	TTAA	2 cut(s)	144, 272
Mva1269I	GAATGC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	238
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	120, 208
PflFI	GACNNNGTC	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	261, 281
RsaNI	GTAC	2 cut(s)	260, 280
SaqAI	TTAA	2 cut(s)	144, 272
SetI	ASST	2 cut(s)	134, 265
Sse9I	AATT	1 cut(s)	266
SspMI	CTAG	1 cut(s)	257
StyI	CCWWGG	1 cut(s)	128
TasI	AATT	1 cut(s)	266
TfiI	GAWTC	2 cut(s)	120, 208
Tru1I	TTAA	2 cut(s)	144, 272
Tru9I	TTAA	2 cut(s)	144, 272
TseFI	GTSAC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.