Rw2G002540

Calmodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000115
Physical Location & Seq
Reverse (-)
2112684 .. 2113953
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002540.1

Sequence Viewer

Length: 672 bp
ATGGTGTTCACCACCTTATTGTTGCTGGTAGTTCTATTTCTTGCTGCCTTCTTTATATATTTCCCCAACCGCAAGCTTCTTGCATGGTTTCAGTCTTTCTTTCCAGTCGAAACGGCTTCTGATTCGACTGCAACGAAGAAAGAAGTCGCGAAGAATGTTAGGTCAGTGATAACAACAAGAAGAAGGGAGGAGGATCCAGAGCTGAAGCGAGTGTTTGCCACCTTTGACAAGAACAGTGATGGGTTTATAACCAAGCAGGAGCTGAAGGAGTCGCTGAAGAATATCAGGGTCTTCATGAGTGATGAGGAAGTCGAAGAAATGGTGAACAAAGTGGACGCAAACGGAGACGGGCTGATCGACTTTTCCGAGTTCTGTTTGCTCTGCCAGGGTCAGTCTATTGTTAATGGAGGAGAAGATGGGAATGAAGCCGGTGAGGTGGACCAAGAGGAGGAACTGAGGGAGGCTTTTGGTGTGTTCGACAAGGATAAAGATGGGTTGATTTCTGTGGAGGAATTGGGGGTGGTTTTGTGCTCTTTGGGTTTGAGAGAAGGGAATAGAGTTGAGGCTTGTAAGGAAATGGTGAAGAAGGTTGATAAGGATGGAGATGGTATGGTTAATTTTGATGAGTTCAAGATGATGATGAAAGGTGGGAGGCTTCTCTCAGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
EF-hand_1 EF-hand_5

Protein Analysis

223

Amino Acids

25.15

Weight (kDa)

4.66

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 67 - 94 4.4e-07 EF hand domain
EF-hand_7 PF13499 67 - 128 2.9e-16 EF-hand domain pair
EF-hand_6 PF13405 67 - 94 1.9e-06 EF-hand domain
EF-hand_8 PF13833 79 - 126 1.3e-06 EF-hand domain pair
EF-hand_1 PF00036 103 - 129 1.8e-06 EF hand domain
EF-hand_7 PF13499 149 - 215 1.6e-13 EF-hand domain pair
EF-hand_1 PF00036 151 - 176 1.6e-06 EF hand domain
EF-hand_6 PF13405 151 - 180 4.3e-07 EF-hand domain
EF-hand_1 PF00036 190 - 215 6.9e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 70
AclWI GGATC 2 cut(s) 188, 201
AcuI CTGAAG 3 cut(s) 224, 284, 296
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 1 cut(s) 631
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 4 cut(s) 76, 202, 262, 665
AluI AGCT 4 cut(s) 76, 202, 262, 665
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 2 cut(s) 188, 201
AlwNI CAGNNNCTG 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 334, 443, 592
AvaII GGWCC 1 cut(s) 439
BamHI GGATCC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 1 cut(s) 31
BccI CCATC 5 cut(s) 233, 410, 485, 593, 599
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 339
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 385
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 1 cut(s) 385
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 446
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 3 cut(s) 203, 423, 461
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 533
BsiSI CCGG 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 193, 354
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 447
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 188, 201
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 385
BssMI GATC 2 cut(s) 193, 354
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 455, 661
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 2 cut(s) 196, 357
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 193, 354
BstNI CCWGG 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 384
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BtsCI GGATG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 171, 241
BtuMI TCGCGA 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 74
CaiI CAGNNNCTG 1 cut(s) 262
CciI TCATGA 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 1 cut(s) 344
CviAII CATG 2 cut(s) 84, 295
DdeI CTNAG 2 cut(s) 455, 661
DpnI GATC 2 cut(s) 195, 356
DpnII GATC 2 cut(s) 193, 354
Eco47I GGWCC 1 cut(s) 439
Eco57I CTGAAG 3 cut(s) 224, 284, 296
EcoRII CCWGG 1 cut(s) 384
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 2 cut(s) 87, 298
FaiI YATR 6 cut(s) 56, 58, 85, 248, 296, 611
FatI CATG 2 cut(s) 83, 294
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HapII CCGG 1 cut(s) 429
HgaI GACGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 87, 298
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 122, 269
HpaII CCGG 1 cut(s) 429
HphI GGTGA 3 cut(s) 334, 443, 592
Hpy166II GTNNAC 4 cut(s) 9, 325, 334, 439
Hpy188I TCNGA 2 cut(s) 121, 367
Hpy188III TCNNGA 4 cut(s) 148, 197, 295, 631
Hpy8I GTNNAC 4 cut(s) 9, 325, 334, 439
HpyAV CCTTC 5 cut(s) 58, 177, 259, 542, 580
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 83, 131
HpyF3I CTNAG 2 cut(s) 455, 661
Hsp92II CATG 2 cut(s) 87, 298
Kzo9I GATC 2 cut(s) 193, 354
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 8 cut(s) 11, 117, 210, 242, 271, 371, 398, 442
Lsp1109I GCAGC 1 cut(s) 31
MalI GATC 2 cut(s) 195, 356
MboI GATC 2 cut(s) 193, 354
MboII GAAGA 8 cut(s) 148, 163, 192, 283, 289, 326, 425, 595
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 2 cut(s) 512, 616
MlyI GAGTC 1 cut(s) 278
MseI TTAA 2 cut(s) 402, 615
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 1 cut(s) 149
NdeII GATC 2 cut(s) 193, 354
NlaIII CATG 2 cut(s) 87, 298
NlaIV GGNNCC 1 cut(s) 195
NruI TCGCGA 1 cut(s) 149
PagI TCATGA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 3 cut(s) 131, 354, 363
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 1 cut(s) 193
RruI TCGCGA 1 cut(s) 149
SaqAI TTAA 2 cut(s) 402, 615
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 193, 354
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 533
SinI GGWCC 1 cut(s) 439
Sse9I AATT 2 cut(s) 512, 616
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 5 cut(s) 108, 125, 312, 357, 477
TasI AATT 2 cut(s) 512, 616
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 402, 615
Tru9I TTAA 2 cut(s) 402, 615
TscAI CASTG 2 cut(s) 171, 241
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 283, 438, 656
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 2 cut(s) 171, 241
VpaK11BI GGWCC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.