pycom02g23970
ERF Family

Mitochondrial transcription termination factor family protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
22053561 .. 22054267
707 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g23970.1

Sequence Viewer

Length: 462 bp
ATGTGGGTTGTCCTAGGAAATGCAATTTCAGCCTCCAAGCTGCTCAATTTGCAAACCCCAGAAAAAGCAGACTCCGTTTTGGCCCTTCTGAGAAGCCATGGATTCTCCCAACTCCAGATCTCGAAGTTCGTTAGGTCCTGTCCAAAGACTCTTTTATCCTGTCCAGAGAAAACCCTTTTGACAAAGCTCAAGTTTTTCGCCTCGGTTGGAGTCTCAAGGGAGGACCTTGCAAGAACTGCGGCCGCCAATCCCTGTCTTTTGGCAGTGAGCTTGGAGAAGCGGATTGTGCCCACTTACAATTTCCTCAGGAGTTTGCTTTCTGAGAAGAATGTTATTGGTGTTTTCAAGCGCCGGTCGTGGATATTCTTGGTTGATCACTGCAAGGATGTGGTGCCAAATACTGGGCTTTTAAGAGAACTAGGAAGAATCCAGAGTTTACGATTGTGTCAGAGAAGACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.2

Weight (kDa)

10.3

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 27 - 142 7e-13 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 401
AciI CCGC 3 cut(s) 239, 243, 280
AcoI YGGCCR 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 346
AluBI AGCT 3 cut(s) 40, 187, 270
AluI AGCT 3 cut(s) 40, 187, 270
Alw26I GTCTC 1 cut(s) 217
AoxI GGCC 2 cut(s) 81, 240
ApeKI GCWGC 1 cut(s) 40
AspA2I CCTAGG 1 cut(s) 13
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 82, 135, 223
AvaII GGWCC 2 cut(s) 135, 223
AvrII CCTAGG 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 291
BanI GGYRCC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 27
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 3 cut(s) 14, 419, 460
BfoI RGCGCY 1 cut(s) 352
BglII AGATCT 1 cut(s) 117
BisI GCNGC 3 cut(s) 41, 240, 243
BlnI CCTAGG 1 cut(s) 13
BlsI GCNGC 3 cut(s) 42, 241, 244
Bme18I GGWCC 2 cut(s) 135, 223
BmgT120I GGNCC 3 cut(s) 82, 135, 223
BmiI GGNNCC 1 cut(s) 393
BmrI ACTGGG 1 cut(s) 411
BmuI ACTGGG 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 173, 199
BsaJI CCNNGG 3 cut(s) 13, 97, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 406
Bse21I CCTNAGG 1 cut(s) 305
BseDI CCNNGG 3 cut(s) 13, 97, 201
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 3 cut(s) 80, 312, 319
BseNI ACTGG 1 cut(s) 406
BseSI GKGCMC 1 cut(s) 291
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 27
Bsh1285I CGRYCG 2 cut(s) 243, 356
BshFI GGCC 2 cut(s) 83, 242
BshNI GGYRCC 1 cut(s) 391
BsiEI CGRYCG 2 cut(s) 243, 356
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 217
BsnI GGCC 2 cut(s) 83, 242
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 2 cut(s) 117, 373
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 3 cut(s) 239, 243, 280
BspANI GGCC 2 cut(s) 83, 242
BspCNI CTCAG 3 cut(s) 81, 313, 318
BspLI GGNNCC 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 3 cut(s) 13, 97, 201
BssMI GATC 2 cut(s) 117, 373
BssT1I CCWWGG 2 cut(s) 13, 97
BstAPI GCANNNNNTGC 1 cut(s) 236
BstDEI CTNAG 3 cut(s) 89, 305, 321
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 2 cut(s) 120, 376
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 2 cut(s) 117, 373
BstMCI CGRYCG 2 cut(s) 243, 356
BstMWI GCNNNNNNNGC 4 cut(s) 29, 49, 236, 286
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BstZI CGGCCG 1 cut(s) 240
Bsu36I CCTNAGG 1 cut(s) 305
BsuRI GGCC 2 cut(s) 83, 242
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 2 cut(s) 270, 376
BtsIMutI CAGTG 2 cut(s) 270, 376
CciNI GCGGCCGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 3 cut(s) 82, 135, 223
CviAII CATG 1 cut(s) 98
CviJI RGCY 8 cut(s) 32, 40, 83, 96, 187, 242, 270, 406
CviKI_1 RGCY 8 cut(s) 32, 40, 83, 96, 187, 242, 270, 406
DdeI CTNAG 3 cut(s) 89, 305, 321
DpnI GATC 2 cut(s) 119, 375
DpnII GATC 2 cut(s) 117, 373
EaeI YGGCCR 1 cut(s) 240
EagI CGGCCG 1 cut(s) 240
EclXI CGGCCG 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 13, 97
Eco47I GGWCC 2 cut(s) 135, 223
Eco52I CGGCCG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 305
EcoO109I RGGNCCY 2 cut(s) 135, 223
EcoT14I CCWWGG 2 cut(s) 13, 97
ErhI CCWWGG 2 cut(s) 13, 97
FaeI CATG 1 cut(s) 101
FaiI YATR 1 cut(s) 99
FatI CATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 41, 240, 243
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 3 cut(s) 41, 240, 243
FspBI CTAG 3 cut(s) 14, 419, 460
GlaI GCGC 1 cut(s) 350
GluI GCNGC 3 cut(s) 41, 240, 243
GsuI CTGGAG 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 2 cut(s) 83, 242
HapII CCGG 1 cut(s) 352
HhaI GCGC 1 cut(s) 351
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HinfI GANTC 5 cut(s) 71, 102, 148, 210, 426
HpaII CCGG 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 437
Hpy188I TCNGA 3 cut(s) 90, 322, 450
Hpy188III TCNNGA 5 cut(s) 115, 121, 164, 307, 430
Hpy8I GTNNAC 1 cut(s) 437
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 4 cut(s) 23, 52, 230, 381
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 49, 236, 286
HpyF3I CTNAG 3 cut(s) 89, 305, 321
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 349
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 117, 373
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 3 cut(s) 14, 419, 460
MalI GATC 2 cut(s) 119, 375
MboI GATC 2 cut(s) 117, 373
MboII GAAGA 2 cut(s) 337, 435
MflI RGATCY 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 3 cut(s) 24, 46, 298
MlyI GAGTC 3 cut(s) 65, 142, 219
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 4 cut(s) 43, 211, 214, 314
MseI TTAA 1 cut(s) 410
MspI CCGG 1 cut(s) 352
MwoI GCNNNNNNNGC 4 cut(s) 29, 49, 236, 286
NcoI CCATGG 1 cut(s) 97
NdeII GATC 2 cut(s) 117, 373
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 393
NotI GCGGCCGC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 102, 426
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 3 cut(s) 42, 241, 244
PleI GAGTC 3 cut(s) 65, 142, 218
PpsI GAGTC 3 cut(s) 65, 142, 218
PpuMI RGGWCCY 2 cut(s) 135, 223
Psp5II RGGWCCY 2 cut(s) 135, 223
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 3 cut(s) 82, 135, 223
PspPPI RGGWCCY 2 cut(s) 135, 223
PsuI RGATCY 1 cut(s) 117
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 3 cut(s) 41, 240, 243
Sau3AI GATC 2 cut(s) 117, 373
Sau96I GGNCC 3 cut(s) 82, 135, 223
SchI GAGTC 3 cut(s) 65, 142, 219
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 42, 137, 189, 228, 272
SinI GGWCC 2 cut(s) 135, 223
SmlI CTYRAG 2 cut(s) 188, 214
SmoI CTYRAG 2 cut(s) 188, 214
Sse9I AATT 3 cut(s) 24, 46, 298
SsiI CCGC 3 cut(s) 239, 243, 280
SspMI CTAG 3 cut(s) 14, 419, 460
StyI CCWWGG 2 cut(s) 13, 97
TaqI TCGA 1 cut(s) 122
TasI AATT 3 cut(s) 24, 46, 298
TauI GCSGC 2 cut(s) 242, 245
TfiI GAWTC 2 cut(s) 102, 426
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 2 cut(s) 270, 383
TseI GCWGC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 2 cut(s) 270, 383
Van91I CCANNNNNTGG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 135, 223
XmaJI CCTAGG 1 cut(s) 13
XspI CTAG 3 cut(s) 14, 419, 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.