pycom02g24000
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000115
Physical Location & Seq
Reverse (-)
22086581 .. 22087072
492 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g24000.1

Sequence Viewer

Length: 492 bp
ATGAGCTTAATGAAATGGGTGTCCCAGTTCGATCTGCAAAAATCAGCTTCGGTGTTAGCAATGAACGTTTTGTGTGGTAACAATAGGTCTATATGGAATCGAAGTCACAAAATTTATAAGAGATGGGGGTGGTCTGAGGATGATGTTCTCGCTGCCTTCAGGAGTCAGCCTCATTGTATGATTGTCTCGGAGAAGAAATTAATACGAGCACTGGAATTTTTAGTGAACGAGATGGGGTGGTCTTCAAAAATGATTGCAAAAAGCCCGCTGGTCCTCTGTTTAAGTTTGGAGAAGAGATTGGTTCCAAGGTGTTCAGTTGTTAAAGTTTTATTGTTGAAAGGATTGATAAAGGGGATTGAAAATGTGAGTTTGTATTCTTTGTTGGTGCCTGCGGAGAAGAATTTCTTGGAGAGGTTTGTGGCCAGAAATATAAATGAAGTACCTCAGTTATTGAGTGTGTATCAAGGAAGAGTTGAAGTCCTGGATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

164

Amino Acids

18.68

Weight (kDa)

9.62

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 26 - 135 4.4e-18 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07900
fragaria_vesca FvH4_1g02670 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g08280 FvH4_1g28911 FvH4_2g24551 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g24560 FvH4_2g25031 FvH4_2g25040 FvH4_2g25050 FvH4_2g25080 FvH4_3g16800 FvH4_4g00540 FvH4_4g00540 FvH4_4g20540 FvH4_6g12320 FvH4_6g36580 FvH4_6g36580 FvH4_7g03240 FvH4_7g03270
malus_domestica MD02G1026800.v1.1 MD02G1278100.v1.1 MD02G1279500.v1.1 MD02G1279600.v1.1 MD02G1279800.v1.1 MD02G1279900.v1.1 MD02G1280100.v1.1 MD02G1280200.v1.1 MD02G1280500.v1.1 MD02G1280700.v1.1 MD02G1280800.v1.1 MD02G1281700.v1.1 MD02G1281800.v1.1 MD02G1281900.v1.1 MD02G1285600.v1.1 MD02G1285700.v1.1 MD03G1280700.v1.1 MD04G1005600.v1.1 MD07G1022900.v1.1 MD07G1032900.v1.1 MD07G1033000.v1.1 MD07G1046200.v1.1 MD07G1047400.v1.1 MD07G1047500.v1.1 MD07G1047600.v1.1 MD07G1047700.v1.1 MD07G1047900.v1.1 MD07G1048000.v1.1 MD07G1048100.v1.1 MD07G1050600.v1.1 MD11G1301600.v1.1 MD15G1168300.v1.1
prunus_persica Prupe.1G005300_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005800_v2.0.a1 Prupe.1G005900_v2.0.a1 Prupe.1G006000_v2.0.a1 Prupe.2G037000_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G037400_v2.0.a1 Prupe.2G040200_v2.0.a1 Prupe.2G040300_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G040400_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041000_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.2G041100_v2.0.a1 Prupe.7G248200_v2.0.a1 Prupe.8G255200_v2.0.a1
pyrus_communis pycom01g04780 pycom02g02190 pycom02g23830 pycom02g23970 pycom02g23980 pycom02g24000 pycom02g24010 pycom02g24020 pycom02g24030 pycom02g24040 pycom02g24290 pycom02g24300 pycom02g24310 pycom06g20690 pycom07g01740 pycom07g03330 pycom07g03440 pycom07g03450 pycom07g03480 pycom07g03490 pycom11g26420
rosa_chinensis RchiOBHm_Chr1g0325381 RchiOBHm_Chr1g0325491 RchiOBHm_Chr1g0325501 RchiOBHm_Chr1g0327641 RchiOBHm_Chr1g0327651 RchiOBHm_Chr2g0087701 RchiOBHm_Chr2g0130871 RchiOBHm_Chr3g0456231 RchiOBHm_Chr4g0385991 RchiOBHm_Chr6g0276761 RchiOBHm_Chr6g0285221 RchiOBHm_Chr6g0293011 RchiOBHm_Chr6g0293041 RchiOBHm_Chr6g0293051 RchiOBHm_Chr6g0293061 RchiOBHm_Chr6g0293101 RchiOBHm_Chr6g0293111 RchiOBHm_Chr6g0293121 RchiOBHm_Chr6g0293131 RchiOBHm_Chr7g0223561
rosa_laevigata RLG00000011974 RLG00000015894
rosa_multiflora Rmu_co8377771.1_g000001 Rmu_co8466941.1_g000001 Rmu_sc0000811.1_g000022 Rmu_sc0000811.1_g000023 Rmu_sc0000838.1_g000008 Rmu_sc0001788.1_g000002 Rmu_sc0001788.1_g000003 Rmu_sc0001788.1_g000004 Rmu_sc0001836.1_g000024 Rmu_sc0001836.1_g000025 Rmu_sc0001903.1_g000013 Rmu_sc0002247.1_g000010 Rmu_sc0002247.1_g000011 Rmu_sc0002826.1_g000016 Rmu_sc0003629.1_g000020 Rmu_sc0003874.1_g000015 Rmu_sc0004481.1_g000017 Rmu_sc0005212.1_g000007 Rmu_sc0005710.1_g000001 Rmu_sc0005823.1_g000013 Rmu_sc0006405.1_g000009 Rmu_sc0006405.1_g000010 Rmu_sc0006801.1_g000010 Rmu_sc0008168.1_g000005 Rmu_sc0014786.1_g000001 Rmu_sc0032118.1_g000001 Rmu_sc0032118.1_g000002 Rmu_ssc0000042.1_g000006
rosa_roxburghii Rroxscaffold_2G00111260 Rroxscaffold_3G00235580 Rroxscaffold_4G00322490 Rroxscaffold_4G00324780 Rroxscaffold_4G00324950 Rroxscaffold_5G00333760 Rroxscaffold_7G00174460 Rroxscaffold_7G00174470 Rroxscaffold_7G00191990
rosa_rugosa Rorug01G0051700 Rorug01G0052100 Rorug01G0069100 Rorug01G0165700 Rorug01G0478600 Rorug02G0311200 Rorug03G0305800.1 Rorug03G0305900.1 Rorug03G0306000 Rorug06G0103900 Rorug06G0232100 Rorug06G0232200 Rorug06G0232300 Rorug06G0232400.1 Rorug06G0232500 Rorug06G0232700
rosa_samantha Rh1AG066700 Rh1AG067400 Rh1AG067500 Rh1AG086200 Rh1AG086300 Rh1BG055100 Rh1BG068800 Rh1CG068800 Rh1CG083700 Rh1CG083800 Rh2AG032500 Rh2BG031600 Rh2BG353500 Rh2CG032000 Rh2CG332100 Rh2DG032000 Rh2DG371500 Rh4AG009800 Rh4BG006800 Rh4CG010600 Rh5AG192200 Rh6AG214100 Rh6AG283700 Rh6AG344800 Rh6AG344900 Rh6AG345000 Rh6AG345100 Rh6AG345200 Rh6AG345300 Rh6BG218900 Rh6BG245300 Rh6BG352300 Rh6BG352400 Rh6BG352600 Rh6BG352700 Rh6BG352800 Rh6BG353400 Rh6DG211600 Rh6DG279100 Rh6DG344900 Rh6DG345000 Rh6DG345100 Rh6DG345200 Rh6DG345300 Rh6DG345900 Rh7BG351900
rosa_wichuraiana Rw1G005450 Rw1G005580 Rw1G006730 Rw2G002540 Rw4G000160 Rw6G018720 Rw6G030090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 385
AciI CCGC 2 cut(s) 266, 392
AclI AACGTT 1 cut(s) 66
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 3 cut(s) 111, 215, 400
AcuI CTGAAG 1 cut(s) 142
AfaI GTAC 1 cut(s) 441
AgsI TTSAA 4 cut(s) 246, 337, 359, 476
AjnI CCWGG 1 cut(s) 480
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 2 cut(s) 6, 47
AluI AGCT 2 cut(s) 6, 47
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 190
AoxI GGCC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 3 cut(s) 111, 215, 400
AseI ATTAAT 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 271
AvaII GGWCC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 422
BanI GGYRCC 1 cut(s) 385
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 117, 226
BciT130I CCWGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 190
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 482
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 303, 387
BmrFI CCNGG 1 cut(s) 482
BmrI ACTGGG 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 19
BpiI GAAGAC 1 cut(s) 234
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BsaJI CCNNGG 1 cut(s) 305
Bse1I ACTGG 2 cut(s) 25, 216
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 482
BseDI CCNNGG 1 cut(s) 305
BseGI GGATG 2 cut(s) 145, 490
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 126, 458
BseNI ACTGG 2 cut(s) 25, 216
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 422
BshNI GGYRCC 1 cut(s) 385
BsiHKAI GWGCWC 1 cut(s) 211
BslFI GGGAC 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 7
BsnI GGCC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 2 cut(s) 266, 392
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 2 cut(s) 127, 457
BspLI GGNNCC 2 cut(s) 303, 387
BspT107I GGYRCC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 66
BsrI ACTGG 2 cut(s) 25, 216
BssECI CCNNGG 1 cut(s) 305
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 482
Bst6I CTCTTC 2 cut(s) 287, 463
BstC8I GCNNGC 2 cut(s) 266, 390
BstDEI CTNAG 2 cut(s) 135, 444
BstF5I GGATG 2 cut(s) 145, 490
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 482
BstSCI CCNGG 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 422
BtsCI GGATG 2 cut(s) 145, 490
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 266, 390
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 440
CviJI RGCY 5 cut(s) 6, 47, 169, 264, 422
CviKI_1 RGCY 5 cut(s) 6, 47, 169, 264, 422
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 2 cut(s) 135, 444
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 2 cut(s) 287, 463
EarI CTCTTC 2 cut(s) 287, 463
Eco130I CCWWGG 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaiI YATR 6 cut(s) 92, 94, 117, 179, 431, 490
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 7
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 422
HinfI GANTC 2 cut(s) 97, 163
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 136, 190
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 37, 257
HpyF3I CTNAG 2 cut(s) 135, 444
HpySE526I ACGT 1 cut(s) 66
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 38, 145, 197, 254, 402, 436, 467
Lsp1109I GCAGC 1 cut(s) 139
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 2 cut(s) 77, 104
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 5 cut(s) 205, 234, 304, 409, 480
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 4 cut(s) 111, 197, 215, 400
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 5 cut(s) 130, 180, 284, 405, 453
Mox20I TGGCCA 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 422
MseI TTAA 4 cut(s) 8, 200, 281, 321
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 268
MspR9I CCNGG 1 cut(s) 482
MvaI CCWGG 1 cut(s) 482
NdeII GATC 1 cut(s) 31
NlaIV GGNNCC 2 cut(s) 303, 387
NmuCI GTSAC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 97
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 171
PpsI GAGTC 1 cut(s) 171
PshBI ATTAAT 1 cut(s) 200
PsiI TTATAA 1 cut(s) 117
Psp1406I AACGTT 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 480
PspGI CCWGG 1 cut(s) 480
PspN4I GGNNCC 2 cut(s) 303, 387
PspPI GGNCC 1 cut(s) 271
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
SaqAI TTAA 4 cut(s) 8, 200, 281, 321
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 482
SduI GDGCHC 1 cut(s) 211
SetI ASST 7 cut(s) 8, 49, 69, 89, 311, 416, 445
SinI GGWCC 1 cut(s) 271
Sse9I AATT 4 cut(s) 111, 197, 215, 400
SsiI CCGC 2 cut(s) 266, 392
StyD4I CCNGG 1 cut(s) 480
StyI CCWWGG 1 cut(s) 305
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 30, 100
TasI AATT 4 cut(s) 111, 197, 215, 400
TfiI GAWTC 1 cut(s) 97
Tru1I TTAA 4 cut(s) 8, 200, 281, 321
Tru9I TTAA 4 cut(s) 8, 200, 281, 321
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 26, 77, 450
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 271
VspI ATTAAT 1 cut(s) 200
XapI RAATTY 3 cut(s) 111, 215, 400
XmnI GAANNNNTTC 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.