FvH4_3g09080

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000860
Physical Location & Seq
Forward (+)
5309559 .. 5311994
2436 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g09080.t1

Sequence Viewer

Length: 684 bp
ATGATTAGCTTTGATGCTGCAACATGGAGCAGTTTCAACCGTTGGATCCAGCTTCAGCCGTTGGATCTATGGGGTTTATCCGGTTATGGGGCCTACGTGTCCAGCAACCTACCCAACATTATGGAGATGGCGCAAATCAAATCGACAAACAAGACCAACACGGTAGCTACAATGAAAATCCGTAGAAACCTTAGCCGTCATGCTGCTCATAGTGAGTCATTTCAACTCGCTACATTCGACCTTCATGCCTCGAAGTCGCTTCAGCCGATCACCGCCTTGACGACAATGGGGGCAAACCTCATTAAGCAAAGACGTTCAACGTCATTCGGGAACTCAAGAAAACATTCTCCCTCGCTCGCGGTCGAAGTTGATTCGGAGATAGGTTCACACATGGAATTGCCTCTTGACTATAAAAATGAAGCGATTCTAGAAGACGACCCTTACACTATGCAAGCCATGGTGATTGGAGTCACAACCGTGGAAAAACAAGCAGCCCAAATAGCTCAGTTGACTGAAACGATAGAGAAGCACCAAAAGACCATTGAAGAGAATGACGTAGAAATTGCATCGCTCATGGAGAAGCTAGAAGTTCACCATGATAATGACTCACAGAACAACATGCATGGCAATAAGAAAGACACTTTTGGTACACACGGCTCAAAAACTGGCTACGATACAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.34

Weight (kDa)

5.91

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 359
AciI CCGC 2 cut(s) 273, 359
AclWI GGATC 3 cut(s) 40, 53, 72
AcuI CTGAAG 2 cut(s) 38, 245
AfaI GTAC 1 cut(s) 649
AfiI CCNNNNNNNGG 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 4 cut(s) 37, 224, 318, 545
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 5 cut(s) 9, 52, 167, 503, 583
AluI AGCT 5 cut(s) 9, 52, 167, 503, 583
AlwI GGATC 3 cut(s) 40, 53, 72
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 17, 203, 491
Asp700I GAANNNNTTC 2 cut(s) 343, 423
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 3 cut(s) 262, 472, 584
BamHI GGATCC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 438
BbvI GCAGC 3 cut(s) 4, 190, 503
BccI CCATC 1 cut(s) 121
BceAI ACGGC 3 cut(s) 43, 180, 670
BcgI CGANNNNNNTGC 2 cut(s) 227, 261
BfaI CTAG 2 cut(s) 428, 584
BisI GCNGC 3 cut(s) 18, 204, 492
BlsI GCNGC 3 cut(s) 19, 205, 493
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 47, 91
BmsI GCATC 2 cut(s) 4, 575
BpiI GAAGAC 1 cut(s) 438
Bpu10I CCTNAGC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 456, 477
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 670
BseDI CCNNGG 2 cut(s) 456, 477
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 518
BseNI ACTGG 1 cut(s) 670
BseXI GCAGC 3 cut(s) 4, 190, 503
Bsh1236I CGCG 1 cut(s) 359
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 92
BsiEI CGRYCG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 87
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 45, 64, 267
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 2 cut(s) 273, 359
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 517
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 2 cut(s) 47, 91
BspPI GGATC 3 cut(s) 40, 53, 72
BsrI ACTGG 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 456, 477
BssMI GATC 3 cut(s) 45, 64, 267
BssT1I CCWWGG 1 cut(s) 456
Bst4CI ACNGT 4 cut(s) 41, 163, 478, 679
Bst6I CTCTTC 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 357, 453
BstDEI CTNAG 2 cut(s) 191, 504
BstDSI CCRYGG 2 cut(s) 456, 477
BstFNI CGCG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 3 cut(s) 48, 67, 270
BstMBI GATC 3 cut(s) 45, 64, 267
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 622
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 3 cut(s) 4, 190, 503
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 2 cut(s) 45, 64
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 2 cut(s) 45, 64
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 2 cut(s) 456, 477
BtgZI GCGATG 1 cut(s) 552
Cac8I GCNNGC 2 cut(s) 357, 453
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 648
CviAII CATG 9 cut(s) 24, 200, 245, 391, 457, 574, 596, 619, 623
CviQI GTAC 1 cut(s) 648
DdeI CTNAG 2 cut(s) 191, 504
DpnI GATC 3 cut(s) 47, 66, 269
DpnII GATC 3 cut(s) 45, 64, 267
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 456
Eco57I CTGAAG 2 cut(s) 38, 245
EcoO109I RGGNCCY 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 456
EcoT22I ATGCAT 1 cut(s) 624
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 9 cut(s) 27, 203, 248, 394, 460, 577, 599, 622, 626
FatI CATG 9 cut(s) 23, 199, 244, 390, 456, 573, 595, 618, 622
Fnu4HI GCNGC 3 cut(s) 18, 204, 492
Fsp4HI GCNGC 3 cut(s) 18, 204, 492
FspBI CTAG 2 cut(s) 428, 584
GlaI GCGC 1 cut(s) 132
GluI GCNGC 3 cut(s) 18, 204, 492
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 133
Hin1II CATG 9 cut(s) 27, 203, 248, 394, 460, 577, 599, 622, 626
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 5 cut(s) 215, 371, 424, 468, 605
HpaII CCGG 1 cut(s) 81
HphI GGTGA 3 cut(s) 262, 472, 584
Hpy166II GTNNAC 4 cut(s) 386, 510, 592, 650
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 4 cut(s) 328, 336, 404, 428
Hpy8I GTNNAC 4 cut(s) 386, 510, 592, 650
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 4 cut(s) 41, 163, 478, 679
HpyCH4IV ACGT 4 cut(s) 96, 313, 320, 555
HpyCH4V TGCA 4 cut(s) 20, 451, 566, 622
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 191, 504
HpySE526I ACGT 4 cut(s) 96, 313, 320, 555
Hsp92II CATG 9 cut(s) 27, 203, 248, 394, 460, 577, 599, 622, 626
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 3 cut(s) 45, 64, 267
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 4 cut(s) 62, 94, 115, 651
Lsp1109I GCAGC 3 cut(s) 4, 190, 503
LweI GCATC 2 cut(s) 4, 575
MaeI CTAG 2 cut(s) 428, 584
MaeII ACGT 4 cut(s) 96, 313, 320, 555
MaeIII GTNAC 1 cut(s) 469
MalI GATC 3 cut(s) 47, 66, 269
MboI GATC 3 cut(s) 45, 64, 267
MboII GAAGA 2 cut(s) 443, 557
MflI RGATCY 2 cut(s) 45, 64
MluCI AATT 2 cut(s) 395, 561
MlyI GAGTC 3 cut(s) 224, 477, 599
MmeI TCCRAC 2 cut(s) 23, 42
MnlI CCTC 4 cut(s) 259, 308, 361, 411
Mph1103I ATGCAT 1 cut(s) 624
MroXI GAANNNNTTC 2 cut(s) 343, 423
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 476, 600
MspI CCGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 500
NcoI CCATGG 1 cut(s) 456
NdeII GATC 3 cut(s) 45, 64, 267
NlaIII CATG 9 cut(s) 27, 203, 248, 394, 460, 577, 599, 622, 626
NlaIV GGNNCC 2 cut(s) 47, 91
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 624
NspI RCATGY 1 cut(s) 622
OliI CACNNNNGTG 1 cut(s) 476
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 263
PdmI GAANNNNTTC 2 cut(s) 343, 423
PfeI GAWTC 2 cut(s) 371, 424
PkrI GCNGC 3 cut(s) 19, 205, 493
PleI GAGTC 3 cut(s) 223, 476, 599
PpsI GAGTC 3 cut(s) 223, 476, 599
Ppu21I YACGTR 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 47, 91
PspPI GGNCC 1 cut(s) 90
PsuI RGATCY 2 cut(s) 45, 64
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
RseI CAYNNNNRTG 2 cut(s) 476, 600
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 3 cut(s) 18, 204, 492
Sau3AI GATC 3 cut(s) 45, 64, 267
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 3 cut(s) 224, 477, 599
SfaNI GCATC 2 cut(s) 4, 575
SmiMI CAYNNNNRTG 2 cut(s) 476, 600
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 2 cut(s) 395, 561
SsiI CCGC 2 cut(s) 273, 359
SspMI CTAG 2 cut(s) 428, 584
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 4 cut(s) 41, 163, 478, 679
TaiI ACGT 4 cut(s) 99, 316, 323, 558
TaqI TCGA 4 cut(s) 143, 237, 251, 363
TasI AATT 2 cut(s) 395, 561
TfiI GAWTC 2 cut(s) 371, 424
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 3 cut(s) 17, 203, 491
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 188, 233, 432
TspGWI ACGGA 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 427
XceI RCATGY 1 cut(s) 622
XmnI GAANNNNTTC 2 cut(s) 343, 423
XspI CTAG 2 cut(s) 428, 584
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.