Rh6DG238700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000860
Physical Location & Seq
Reverse (-)
42519207 .. 42534178
14972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG238700.1

Sequence Viewer

Length: 288 bp
ATGTTAAAGCCACTGCGAGACTTGATCTGCGCCTACAAGCAACATCAGAAGTTCTATGCTGGTAAGTGTCACAGCACAGACGGACATGGAGGAAGAAGAACCCATATTCCTTTAGGGGCACAATCCAAGATAGATGGTGAGTTTATTTTGGCTGCTGATGTTCGCATTCAAGCATCCAAGGTTAGCAACAAATTCAAGTCAAGAATTAAGCAGGAGAAGAAAACTTGGCATCCAAGCAACGCAGCAAATGTGACGATAAAATTAGGCAGTCTTTTCCCATACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

10.07

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 191
AgsI TTSAA 2 cut(s) 170, 196
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
Alw26I GTCTC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 152, 242
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 121
BbvI GCAGC 2 cut(s) 139, 254
BccI CCATC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 12
BisI GCNGC 2 cut(s) 153, 243
BlsI GCNGC 2 cut(s) 154, 244
BmsI GCATC 2 cut(s) 182, 238
BsaJI CCNNGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 173, 229
BseSI GKGCMC 1 cut(s) 121
BseXI GCAGC 2 cut(s) 139, 254
BsmAI GTCTC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 121
Bsp143I GATC 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 173, 229
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 139, 254
BtsCI GGATG 2 cut(s) 173, 229
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
CfoI GCGC 1 cut(s) 32
CviAII CATG 1 cut(s) 86
CviJI RGCY 2 cut(s) 10, 152
CviKI_1 RGCY 2 cut(s) 10, 152
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 57, 87, 105, 280
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 153, 243
FokI GGATG 2 cut(s) 160, 216
Fsp4HI GCNGC 2 cut(s) 153, 243
GlaI GCGC 1 cut(s) 31
GluI GCNGC 2 cut(s) 153, 243
HhaI GCGC 1 cut(s) 32
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HphI GGTGA 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 201
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 2 cut(s) 45, 197
Lsp1109I GCAGC 2 cut(s) 139, 254
LweI GCATC 2 cut(s) 182, 238
MaeIII GTNAC 2 cut(s) 68, 250
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 3 cut(s) 105, 108, 229
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 3 cut(s) 191, 204, 260
MnlI CCTC 1 cut(s) 83
MseI TTAA 2 cut(s) 5, 207
Mva1269I GAATGC 1 cut(s) 165
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 89
NmuCI GTSAC 2 cut(s) 68, 250
PctI GAATGC 1 cut(s) 165
PkrI GCNGC 2 cut(s) 154, 244
SaqAI TTAA 2 cut(s) 5, 207
SatI GCNGC 2 cut(s) 153, 243
Sau3AI GATC 1 cut(s) 24
SduI GDGCHC 1 cut(s) 121
SetI ASST 1 cut(s) 183
SfaNI GCATC 2 cut(s) 182, 238
Sse9I AATT 3 cut(s) 191, 204, 260
StyI CCWWGG 1 cut(s) 177
TasI AATT 3 cut(s) 191, 204, 260
Tru1I TTAA 2 cut(s) 5, 207
Tru9I TTAA 2 cut(s) 5, 207
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 68, 250
TseI GCWGC 2 cut(s) 152, 242
Tsp45I GTSAC 2 cut(s) 68, 250
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.