Rh1AG413600

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000860
Physical Location & Seq
Reverse (-)
64586152 .. 64586454
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG413600.1

Sequence Viewer

Length: 303 bp
ATGGAGCGTGGAAATTGGCGTTGTCTATTGGTGCTGACCGTGATCATGAGTATTAATTGCAATCCAACGGTGGGTGATAGAGATGATACTTGGGCTGCGATTCGGGCCATGGATTGTAGGGTCTTGGTTTTGGGTTGTTATGGAGATCCGATGATTGAGCGACAGATGGTGTTGGCGAAAATGGTAGAGAAGAAGGGTGTTCGGACGGTGACCCACTTTGGCGATGGTTGTCATGGTTTGGAAATAACTGATCCGTCCAAAGCTCCGGCTTTATTTGTCATCTTGAAAAATTTCATATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

100

Amino Acids

11.23

Weight (kDa)

7.63

Isoelectric Point (pI)

21.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 140, 245
AcsI RAATTY 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
AlwI GGATC 2 cut(s) 140, 245
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 289
AseI ATTAAT 1 cut(s) 54
Asp700I GAANNNNTTC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 2 cut(s) 86, 220
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 160, 218
BclI TGATCA 1 cut(s) 42
BfaI CTAG 1 cut(s) 301
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 71
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 42, 145, 250
Bsp19I CCATGG 1 cut(s) 108
BspANI GGCC 1 cut(s) 107
BspHI TCATGA 1 cut(s) 45
BspPI GGATC 2 cut(s) 140, 245
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 42, 145, 250
BssT1I CCWWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 40, 70, 208
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 208
BstKTI GATC 3 cut(s) 45, 148, 253
BstMBI GATC 3 cut(s) 42, 145, 250
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstPI GGTNACC 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 237
CciI TCATGA 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 105
CviAII CATG 3 cut(s) 46, 109, 233
CviJI RGCY 4 cut(s) 95, 107, 263, 269
CviKI_1 RGCY 4 cut(s) 95, 107, 263, 269
DpnI GATC 3 cut(s) 44, 147, 252
DpnII GATC 3 cut(s) 42, 145, 250
Eco130I CCWWGG 1 cut(s) 108
Eco91I GGTNACC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 3 cut(s) 49, 112, 236
FaiI YATR 6 cut(s) 47, 110, 141, 234, 296, 298
FatI CATG 3 cut(s) 45, 108, 232
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 301
GluI GCNGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 266
Hin1II CATG 3 cut(s) 49, 112, 236
HinfI GANTC 1 cut(s) 100
HpaII CCGG 1 cut(s) 266
HphI GGTGA 2 cut(s) 86, 220
Hpy188I TCNGA 2 cut(s) 150, 204
Hpy188III TCNNGA 2 cut(s) 46, 283
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 3 cut(s) 40, 70, 208
HpyCH4V TGCA 1 cut(s) 60
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
Hsp92II CATG 3 cut(s) 49, 112, 236
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 3 cut(s) 42, 145, 250
LmnI GCTCC 2 cut(s) 4, 268
LpnPI CCDG 1 cut(s) 279
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 1 cut(s) 301
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 44, 147, 252
MboI GATC 3 cut(s) 42, 145, 250
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 145
MluCI AATT 3 cut(s) 13, 55, 289
MmeI TCCRAC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 1 cut(s) 54
MspI CCGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 108
NdeII GATC 3 cut(s) 42, 145, 250
NlaIII CATG 3 cut(s) 49, 112, 236
NmuCI GTSAC 1 cut(s) 208
PagI TCATGA 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 54
PspEI GGTNACC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 145
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 3 cut(s) 42, 145, 250
Sau96I GGNCC 1 cut(s) 105
SetI ASST 1 cut(s) 265
Sse9I AATT 3 cut(s) 13, 55, 289
SspMI CTAG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 40, 70, 208
TasI AATT 3 cut(s) 13, 55, 289
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 1 cut(s) 243
VspI ATTAAT 1 cut(s) 54
XapI RAATTY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.