Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Forward (+)

63806738 .. 63807676

Gene Structure 939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCAAAACCTGATCAATTCAAACCCAACATCATCTCCAATCCAGATGGAACCTACACGCGCCTCTTAAAATTTCCAAGCACCGAGGCCGACTCTACCTCAGCCACTAACCATGTACTCTCCAAAGACATCCCTGTAAACCCTGAAACCCAAACCATGGTCCGACTCTTCCTCCCCCGGAATGTCCTTGGCTCCAAAACCAAACTCCCTCTCATATTTTACTACCACGGTGGTGCGTTTCTCTATTTCAGCGCAACTACAACTGTTTTCCATGAGTTTTGTTCCAACATGGCTTTGGAACTCCAAGCTATTGTTGTCTCCGTGGACTACCGTCTTGCCCCTGAACACCGCCTCCCGGCAGCCTACGAGGATGCCATAGATGCGTTGCACTGGATCAAGACCACAGAGGAAGAGTGGGTAAGAGAATTTGCTGATTTCTCAAGCTGTTTTTTAATGGGTACTAGTTCTGGTGGAAACCTAGCTTACCATGCTGGGCTTCTTGCTTGTAAAGTTAGAGATCACCTTGGGCCTTTGGAAATCAAAGGACTGATATTGCACCATCCCTTTTTTGCGTGGAAATTGGCGTTGCCTATTGGTGCTGACCGTGATCATGAGTATTGCAATCCAACGGTGGGCGATAGAGATGGTATTTGGGCTGCGATTCGGGCCATGGATTGTAGGGTCTTGGTTCTGGGTTGTTATGGAGATCCGATGATTGAGCGACAGATGGGGTTGGCGAAAATGGTAGAGGAGAAGGGTGTACGAACGGTGACTCATTTTGGCGATGGTTGTCATGGTTTGGAAATAACTGACCCGTCCAAAGCTCCGGGTTTATTTGTCGACTTGAAAAATTTCATATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

287

Amino Acids

32.06

Weight (kDa)

5.93

Isoelectric Point (pI)

27.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	65 - 168	7.4e-14	BD-FAE
Abhydrolase_3	PF07859	72 - 189	2.5e-35	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	840
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	2 cut(s)	401, 701
AcsI	RAATTY	3 cut(s)	71, 425, 850
AfaI	GTAC	3 cut(s)	117, 460, 762
AfiI	CCNNNNNNNGG	3 cut(s)	157, 355, 632
AgsI	TTSAA	2 cut(s)	22, 847
AhlI	ACTAGT	1 cut(s)	461
AleI	CACNNNNGTG	1 cut(s)	231
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	4 cut(s)	308, 444, 482, 824
AluI	AGCT	4 cut(s)	308, 444, 482, 824
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	401, 701
AoxI	GGCC	3 cut(s)	87, 527, 666
ApeKI	GCWGC	2 cut(s)	359, 656
ApoI	RAATTY	3 cut(s)	71, 425, 850
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	63, 254
AspS9I	GGNCC	3 cut(s)	160, 527, 666
AsuC2I	CCSGG	3 cut(s)	178, 356, 828
AsuHPI	GGTGA	2 cut(s)	512, 781
AvaII	GGWCC	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	371, 643
BccI	CCATC	5 cut(s)	41, 567, 638, 721, 779
BclI	TGATCA	2 cut(s)	13, 607
BcnI	CCSGG	3 cut(s)	178, 356, 828
BcoDI	GTCTC	1 cut(s)	322
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	462, 479
BisI	GCNGC	2 cut(s)	360, 657
BlsI	GCNGC	2 cut(s)	361, 658
Bme1390I	CCNGG	3 cut(s)	178, 356, 828
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	3 cut(s)	160, 527, 666
BmiI	GGNNCC	2 cut(s)	52, 193
BmrFI	CCNGG	3 cut(s)	178, 356, 828
BmsI	GCATC	2 cut(s)	361, 370
BoxI	GACNNNNGTC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu10I	CCTNAGC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	424
BpuMI	CCSGG	3 cut(s)	178, 356, 828
BsaJI	CCNNGG	8 cut(s)	84, 156, 176, 187, 226, 321, 523, 669
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 156, 186, 336, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 355, 632
Bse1I	ACTGG	1 cut(s)	395
BseDI	CCNNGG	8 cut(s)	84, 156, 176, 187, 226, 321, 523, 669
BseGI	GGATG	3 cut(s)	129, 376, 559
BseLI	CCNNNNNNNGG	3 cut(s)	157, 355, 632
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	764
BseXI	GCAGC	2 cut(s)	371, 643
BseYI	CCCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	89, 529, 668
BsiSI	CCGG	3 cut(s)	178, 356, 827
BslI	CCNNNNNNNGG	3 cut(s)	157, 355, 632
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	89, 529, 668
Bsp143I	GATC	5 cut(s)	13, 393, 517, 607, 706
Bsp19I	CCATGG	2 cut(s)	156, 669
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	3 cut(s)	89, 529, 668
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	2 cut(s)	52, 193
BspPI	GGATC	2 cut(s)	401, 701
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	8 cut(s)	84, 156, 176, 187, 226, 321, 523, 669
BssMI	GATC	5 cut(s)	13, 393, 517, 607, 706
BssT1I	CCWWGG	4 cut(s)	156, 187, 523, 669
Bst4CI	ACNGT	6 cut(s)	230, 265, 332, 605, 631, 769
Bst6I	CTCTTC	2 cut(s)	173, 405
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	4 cut(s)	156, 226, 321, 669
BstF5I	GGATG	3 cut(s)	129, 376, 559
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	63, 254
BstKTI	GATC	5 cut(s)	16, 396, 520, 610, 709
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	13, 393, 517, 607, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 488, 665
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	3 cut(s)	176, 354, 826
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	371, 643
BstX2I	RGATCY	1 cut(s)	706
BstYI	RGATCY	1 cut(s)	706
BsuRI	GGCC	3 cut(s)	89, 529, 668
BtgI	CCRYGG	4 cut(s)	156, 226, 321, 669
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	3 cut(s)	129, 376, 559
BtsIMutI	CAGTG	1 cut(s)	388
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	2 cut(s)	63, 254
Cfr13I	GGNCC	3 cut(s)	160, 527, 666
Csp6I	GTAC	3 cut(s)	116, 459, 761
CviAII	CATG	8 cut(s)	113, 157, 272, 289, 488, 611, 670, 794
CviQI	GTAC	3 cut(s)	116, 459, 761
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	5 cut(s)	15, 395, 519, 609, 708
DpnII	GATC	5 cut(s)	13, 393, 517, 607, 706
Eam1104I	CTCTTC	2 cut(s)	173, 405
EarI	CTCTTC	2 cut(s)	173, 405
Eco130I	CCWWGG	4 cut(s)	156, 187, 523, 669
Eco47I	GGWCC	1 cut(s)	160
EcoT14I	CCWWGG	4 cut(s)	156, 187, 523, 669
ErhI	CCWWGG	4 cut(s)	156, 187, 523, 669
FaeI	CATG	8 cut(s)	116, 160, 275, 292, 491, 614, 673, 797
FatI	CATG	8 cut(s)	112, 156, 271, 288, 487, 610, 669, 793
FbaI	TGATCA	2 cut(s)	13, 607
FblI	GTMKAC	1 cut(s)	840
Fnu4HI	GCNGC	2 cut(s)	360, 657
FokI	GGATG	3 cut(s)	116, 383, 546
Fsp4HI	GCNGC	2 cut(s)	360, 657
FspBI	CTAG	2 cut(s)	462, 479
GlaI	GCGC	2 cut(s)	62, 253
GluI	GCNGC	2 cut(s)	360, 657
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	89, 529, 668
HapII	CCGG	3 cut(s)	178, 356, 827
HhaI	GCGC	2 cut(s)	63, 254
Hin1II	CATG	8 cut(s)	116, 160, 275, 292, 491, 614, 673, 797
Hin6I	GCGC	2 cut(s)	61, 252
HinP1I	GCGC	2 cut(s)	61, 252
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	4 cut(s)	92, 165, 661, 772
HpaII	CCGG	3 cut(s)	178, 356, 827
HphI	GGTGA	2 cut(s)	512, 781
Hpy166II	GTNNAC	4 cut(s)	139, 325, 761, 841
Hpy188I	TCNGA	2 cut(s)	164, 711
Hpy188III	TCNNGA	3 cut(s)	44, 397, 611
Hpy8I	GTNNAC	4 cut(s)	139, 325, 761, 841
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	6 cut(s)	230, 265, 332, 605, 631, 769
HpyCH4V	TGCA	3 cut(s)	388, 556, 621
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 488, 665
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	8 cut(s)	116, 160, 275, 292, 491, 614, 673, 797
HspAI	GCGC	2 cut(s)	61, 252
Ksp22I	TGATCA	2 cut(s)	13, 607
Kzo9I	GATC	5 cut(s)	13, 393, 517, 607, 706
LmnI	GCTCC	2 cut(s)	197, 829
Lsp1109I	GCAGC	2 cut(s)	371, 643
LweI	GCATC	2 cut(s)	361, 370
MaeI	CTAG	2 cut(s)	462, 479
MaeIII	GTNAC	1 cut(s)	769
MalI	GATC	5 cut(s)	15, 395, 519, 609, 708
MboI	GATC	5 cut(s)	13, 393, 517, 607, 706
MboII	GAAGA	2 cut(s)	160, 422
MflI	RGATCY	1 cut(s)	706
MluCI	AATT	5 cut(s)	17, 71, 425, 578, 850
MlyI	GAGTC	3 cut(s)	86, 159, 766
MmeI	TCCRAC	3 cut(s)	187, 309, 650
MnlI	CCTC	9 cut(s)	74, 79, 109, 182, 219, 361, 362, 400, 742
MroXI	GAANNNNTTC	1 cut(s)	851
MseI	TTAA	2 cut(s)	68, 452
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	3 cut(s)	178, 356, 827
MspR9I	CCNGG	3 cut(s)	178, 356, 828
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	380, 488, 665
NciI	CCSGG	3 cut(s)	178, 356, 828
NcoI	CCATGG	2 cut(s)	156, 669
NdeII	GATC	5 cut(s)	13, 393, 517, 607, 706
NlaIII	CATG	8 cut(s)	116, 160, 275, 292, 491, 614, 673, 797
NlaIV	GGNNCC	2 cut(s)	52, 193
NmuCI	GTSAC	1 cut(s)	769
OliI	CACNNNNGTG	1 cut(s)	231
PagI	TCATGA	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	1 cut(s)	661
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	361, 658
PleI	GAGTC	3 cut(s)	86, 159, 766
PpsI	GAGTC	3 cut(s)	86, 159, 766
PshAI	GACNNNNGTC	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	52, 193
PspPI	GGNCC	3 cut(s)	160, 527, 666
PsuI	RGATCY	1 cut(s)	706
RsaI	GTAC	3 cut(s)	117, 460, 762
RsaNI	GTAC	3 cut(s)	116, 459, 761
RseI	CAYNNNNRTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	68, 452
SatI	GCNGC	2 cut(s)	360, 657
Sau3AI	GATC	5 cut(s)	13, 393, 517, 607, 706
Sau96I	GGNCC	3 cut(s)	160, 527, 666
SchI	GAGTC	3 cut(s)	86, 159, 766
ScrFI	CCNGG	3 cut(s)	178, 356, 828
SetI	ASST	9 cut(s)	13, 56, 101, 310, 446, 480, 484, 525, 826
SfaNI	GCATC	2 cut(s)	361, 370
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	5 cut(s)	17, 71, 425, 578, 850
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	2 cut(s)	462, 479
StyD4I	CCNGG	3 cut(s)	176, 354, 826
StyI	CCWWGG	4 cut(s)	156, 187, 523, 669
TaaI	ACNGT	6 cut(s)	230, 265, 332, 605, 631, 769
TaqI	TCGA	1 cut(s)	840
TasI	AATT	5 cut(s)	17, 71, 425, 578, 850
TatI	WGTACW	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	661
Tru1I	TTAA	2 cut(s)	68, 452
Tru9I	TTAA	2 cut(s)	68, 452
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	2 cut(s)	359, 656
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	1 cut(s)	844
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	3 cut(s)	71, 425, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	840
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	2 cut(s)	462, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.