Rh2DG217900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000860
Physical Location & Seq
Reverse (-)
20910695 .. 20911096
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG217900.1

Sequence Viewer

Length: 402 bp
ATGGCTTCAAAGATGATTCAACTCAAATCAACAAACAAGACCAATAAGGTAGCTACTCTGAAAATGAGTAGAAACCTTAACAATCATACCGTTCGGAGTGAGTCGTCTCAACTCGCGACATTCATAACTCATCCATCTCAGTCATGTCAACCGATCGTCACTTCGACAACAATGGGGGCAAACCTCACTAAGAAAAGATGGTCAACATGCTCAAGCGACTCAAGGGAACATTCTTCCTCGCACACTGCCAGTGTTGATCAGCGTACACACCTACGGCCCAGTTCGTCTTTTGATAACCAAACGGAAGAGACATTGGAAGATTCCTCTTTTGCTATGCAAGTCATGGTAGTAGGGGTCACCACCGTGGAAGAACAGACGACTCAAATAGCCCAATTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.66

Weight (kDa)

8.71

Isoelectric Point (pI)

66.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 116
AfaI GTAC 1 cut(s) 265
AgsI TTSAA 2 cut(s) 9, 20
AleI CACNNNNGTG 1 cut(s) 362
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 111, 302
AoxI GGCC 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 349
BccI CCATC 2 cut(s) 142, 192
BceAI ACGGC 1 cut(s) 290
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 111, 302
BglI GCCNNNNNGGC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 196, 205
BsaJI CCNNGG 1 cut(s) 363
Bse1I ACTGG 2 cut(s) 249, 279
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 2 cut(s) 249, 279
Bsh1236I CGCG 1 cut(s) 116
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 111, 302
BsmBI CGTCTC 1 cut(s) 111
BsnI GGCC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 153, 256
Bsp68I TCGCGA 1 cut(s) 116
BspANI GGCC 1 cut(s) 277
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 116
BsrI ACTGG 2 cut(s) 249, 279
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 2 cut(s) 153, 256
Bst4CI ACNGT 2 cut(s) 91, 364
Bst6I CTCTTC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 138, 189
BstDSI CCRYGG 1 cut(s) 363
BstEII GGTNACC 1 cut(s) 355
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 2 cut(s) 156, 259
BstMAI GTCTC 2 cut(s) 111, 302
BstMBI GATC 2 cut(s) 153, 256
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 210
BstPI GGTNACC 1 cut(s) 355
BstUI CGCG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 243, 256
BtuMI TCGCGA 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 264
CviAII CATG 3 cut(s) 144, 207, 343
CviJI RGCY 5 cut(s) 5, 53, 277, 389, 398
CviKI_1 RGCY 5 cut(s) 5, 53, 277, 389, 398
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 138, 189
DpnI GATC 2 cut(s) 155, 258
DpnII GATC 2 cut(s) 153, 256
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco91I GGTNACC 1 cut(s) 355
EcoO65I GGTNACC 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 3 cut(s) 147, 210, 346
FaiI YATR 6 cut(s) 87, 125, 145, 208, 335, 344
FatI CATG 3 cut(s) 143, 206, 342
FbaI TGATCA 1 cut(s) 256
FokI GGATG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 277
Hin1II CATG 3 cut(s) 147, 210, 346
HincII GTYRAC 2 cut(s) 149, 204
HindII GTYRAC 2 cut(s) 149, 204
HinfI GANTC 5 cut(s) 16, 101, 218, 320, 379
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 3 cut(s) 149, 204, 266
Hpy188I TCNGA 2 cut(s) 60, 96
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 3 cut(s) 149, 204, 266
HpyCH4III ACNGT 2 cut(s) 91, 364
HpyCH4V TGCA 1 cut(s) 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 2 cut(s) 138, 189
Hsp92II CATG 3 cut(s) 147, 210, 346
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 2 cut(s) 153, 256
LpnPI CCDG 2 cut(s) 262, 292
MaeIII GTNAC 2 cut(s) 157, 355
MalI GATC 2 cut(s) 155, 258
MboI GATC 2 cut(s) 153, 256
MboII GAAGA 4 cut(s) 225, 317, 329, 380
MfeI CAATTG 1 cut(s) 392
MluCI AATT 1 cut(s) 392
MlyI GAGTC 3 cut(s) 110, 212, 373
MnlI CCTC 3 cut(s) 194, 247, 334
MseI TTAA 2 cut(s) 78, 400
MslI CAYNNNNRTG 1 cut(s) 362
MunI CAATTG 1 cut(s) 392
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 2 cut(s) 153, 256
NlaIII CATG 3 cut(s) 147, 210, 346
NmuCI GTSAC 2 cut(s) 157, 355
NruI TCGCGA 1 cut(s) 116
NspI RCATGY 1 cut(s) 210
OliI CACNNNNGTG 1 cut(s) 362
PfeI GAWTC 2 cut(s) 16, 320
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 3 cut(s) 109, 212, 373
PpsI GAGTC 3 cut(s) 109, 212, 373
PspEI GGTNACC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 276
PvuI CGATCG 1 cut(s) 156
RruI TCGCGA 1 cut(s) 116
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 2 cut(s) 78, 400
Sau3AI GATC 2 cut(s) 153, 256
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 3 cut(s) 110, 212, 373
SetI ASST 5 cut(s) 51, 55, 78, 186, 273
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 211, 220
SmoI CTYRAG 2 cut(s) 211, 220
Sse9I AATT 1 cut(s) 392
TaaI ACNGT 2 cut(s) 91, 364
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 392
TfiI GAWTC 2 cut(s) 16, 320
Tru1I TTAA 2 cut(s) 78, 400
Tru9I TTAA 2 cut(s) 78, 400
TscAI CASTG 2 cut(s) 250, 256
TseFI GTSAC 2 cut(s) 157, 355
Tsp45I GTSAC 2 cut(s) 157, 355
TspDTI ATGAA 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 250, 256
XceI RCATGY 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.