Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Forward (+)

4101678 .. 4102130

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGGTACTAGTTCTGGTGGAAAGCTAGCTTACCATGCAGGGCTTCTTGCTTGTGAGAGATCACCTTGGGCCTTTGAAAATCAAAGGGCTGATATTGCACCATCCCTTTTTTGGTGGATCCGAGAGGACTGGTCGGAACTGAAGATGGAGAATGATCGAATTTTGCCACTACGGGCAAGCGATGGAGCGTGGAAATTGGCGTTGTCTATTGGTGCTGACCGTGATCATGAGTATTGCAATCCAACGGTGGGTGATAGAGATGATACTTGGGCTGCGATTCGGGGTTGTTATGGAGATCCGATGATTGAGCGACAGATGGGGTTGGCGAAAATGGTAGAGAAGAAGGGTGTTCGGACGGTGACCCACTTTGGCGATGGTTGTCATGGTTTGGAAATAACTGATCCGTCCAAAGCTCCGGCTTTATTTGTCATCTTGAAAAATTTCATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

151

Amino Acids

16.84

Weight (kDa)

5.79

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	1 - 128	1.5e-10	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	112, 125, 290, 395
AcsI	RAATTY	2 cut(s)	159, 439
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	7, 449
AfiI	CCNNNNNNNGG	2 cut(s)	111, 248
AgsI	TTSAA	2 cut(s)	77, 436
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	3 cut(s)	25, 29, 413
AluI	AGCT	3 cut(s)	25, 29, 413
AlwI	GGATC	4 cut(s)	112, 125, 290, 395
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	2 cut(s)	159, 439
Asp700I	GAANNNNTTC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	3 cut(s)	54, 263, 370
AsuNHI	GCTAGC	1 cut(s)	25
BamHI	GGATCC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	5 cut(s)	109, 139, 176, 310, 368
BclI	TGATCA	1 cut(s)	223
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 26
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	119
BmtI	GCTAGC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 248
Bse1I	ACTGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	111, 248
BseNI	ACTGG	1 cut(s)	134
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	111, 248
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
BspANI	GGCC	1 cut(s)	71
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	119
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	4 cut(s)	112, 125, 290, 395
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	221, 247, 358
BstC8I	GCNNGC	2 cut(s)	27, 178
BstEII	GGTNACC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	101
BstKTI	GATC	6 cut(s)	62, 120, 157, 226, 298, 403
BstMBI	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 95
BstPI	GGTNACC	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	117, 295
BstYI	RGATCY	2 cut(s)	117, 295
BsuRI	GGCC	1 cut(s)	71
BtgZI	GCGATG	2 cut(s)	195, 387
BtsCI	GGATG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	27, 178
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	6, 448
CviAII	CATG	4 cut(s)	35, 227, 383, 445
CviJI	RGCY	8 cut(s)	25, 29, 43, 71, 89, 272, 413, 419
CviKI_1	RGCY	8 cut(s)	25, 29, 43, 71, 89, 272, 413, 419
CviQI	GTAC	2 cut(s)	6, 448
DpnI	GATC	6 cut(s)	61, 119, 156, 225, 297, 402
DpnII	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
Eco130I	CCWWGG	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	161
Eco91I	GGTNACC	1 cut(s)	358
EcoO65I	GGTNACC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	4 cut(s)	38, 230, 386, 448
FaiI	YATR	5 cut(s)	36, 228, 291, 384, 446
FatI	CATG	4 cut(s)	34, 226, 382, 444
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	9, 26
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	4 cut(s)	38, 230, 386, 448
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	3 cut(s)	54, 263, 370
Hpy188I	TCNGA	4 cut(s)	122, 136, 300, 354
Hpy188III	TCNNGA	2 cut(s)	227, 433
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	3 cut(s)	221, 247, 358
HpyCH4V	TGCA	3 cut(s)	38, 98, 237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 95
Hsp92II	CATG	4 cut(s)	38, 230, 386, 448
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
LmnI	GCTCC	2 cut(s)	185, 418
LpnPI	CCDG	3 cut(s)	24, 115, 429
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	2 cut(s)	9, 26
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	6 cut(s)	61, 119, 156, 225, 297, 402
MboI	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
MboII	GAAGA	2 cut(s)	154, 352
MflI	RGATCY	2 cut(s)	117, 295
MluCI	AATT	3 cut(s)	159, 194, 439
MmeI	TCCRAC	2 cut(s)	114, 266
MnlI	CCTC	1 cut(s)	118
MroXI	GAANNNNTTC	1 cut(s)	440
MspI	CCGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	35, 95
NdeII	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	38, 230, 386, 448
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	117, 295
RsaI	GTAC	2 cut(s)	7, 449
RsaNI	GTAC	2 cut(s)	6, 448
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	6 cut(s)	59, 117, 154, 223, 295, 400
Sau96I	GGNCC	1 cut(s)	69
SetI	ASST	4 cut(s)	27, 31, 67, 415
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	3 cut(s)	159, 194, 439
SspMI	CTAG	2 cut(s)	9, 26
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	3 cut(s)	221, 247, 358
TaqI	TCGA	1 cut(s)	157
TasI	AATT	3 cut(s)	159, 194, 439
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	393
XapI	RAATTY	2 cut(s)	159, 439
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 371
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	2 cut(s)	9, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.