Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Forward (+)

49962508 .. 49963446

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG369200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCAAAACCTGATCAATTCAAACCCAACATCATCTCCAATCCAGATGGAACCTACACGCGCCTCTTAAAATTTCCAAGCACCGAGGCCGACTCTACCTCAGCCACTAACCATGTACTCTCCAAAGACATCCCTGTAAACCCTAAAACCCAAACCATGGTCCGACTCTTCCTCCCTCGGAATGTCCTTGGCTCAAAAACCAAACTCCCTCTCATATTTTACTACCACGGTGGTGCGTTTCTCTATTTCAGCGCAACTACAACTGTTTTTCATGAGTTTTGTTCCAACATGGCTTTGGAACTCCAAGCTATTGTTGTCTCCGTGGACTACCGTCTTGCCCCTGAACACCGCCTCCCGGCAGCCTACGAGGATGCCATAGATGCGTTGCACTGGATCAAGACCACAGAGGAAGAGTGGGTAAGAGAATTTGCTGATTTCTCAAGCTGTTTTTTAATGGGTACTAGTTCTGGTGGAAACCTAGCTTACCATGCTGGGCTTCTTGCTTGTGAAGTTAGAGATCACCTTGGGCCTTTGGAAATCAAAGGACTGATATTGCACCATCCCTTTTTTGGTGGATCCGAAAGGACCGAGTCGGAACTGAAGATGGAGCATGATCGAATTTTGCCACTACGGGCAAGCGATGGAGCGTGGAAATTGGCGTTGCCTATTGGTGCTGACCGTGATCATGAGTATTGCAATCCAACGGTGGGCGATAGAGATGGTATTTGGGCTGCGATTCGGGCCATGGATTGTAGGGTCTTGGTTCTGGGTTGTTATGGAGATCCGATGATTGAGCGACAGATGGGGTTGGTGAAAATGGTAGAGGAGAAGGGTGTACGAACGGTGACTCATTTTGGCGATGGTTGTCATGGTTTGGAAATAACTGACCCGTCCAAAGCTCCGGGTTTATTTGTCGACTTGAAAATTTTCATGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

312

Amino Acids

34.87

Weight (kDa)

5.8

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	65 - 168	8.6e-14	BD-FAE
Abhydrolase_3	PF07859	72 - 290	9.1e-49	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	915
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	349
AclWI	GGATC	4 cut(s)	401, 570, 583, 776
AcsI	RAATTY	4 cut(s)	71, 425, 618, 924
AcuI	CTGAAG	1 cut(s)	620
AfaI	GTAC	4 cut(s)	117, 460, 837, 935
AfiI	CCNNNNNNNGG	4 cut(s)	157, 355, 569, 707
AgsI	TTSAA	2 cut(s)	22, 922
AhlI	ACTAGT	1 cut(s)	461
AleI	CACNNNNGTG	1 cut(s)	231
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	4 cut(s)	308, 444, 482, 899
AluI	AGCT	4 cut(s)	308, 444, 482, 899
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	4 cut(s)	401, 570, 583, 776
AoxI	GGCC	3 cut(s)	87, 527, 741
ApeKI	GCWGC	2 cut(s)	359, 731
ApoI	RAATTY	4 cut(s)	71, 425, 618, 924
Asp700I	GAANNNNTTC	1 cut(s)	926
AspLEI	GCGC	2 cut(s)	63, 254
AspS9I	GGNCC	4 cut(s)	160, 527, 585, 741
AsuC2I	CCSGG	2 cut(s)	356, 903
AsuHPI	GGTGA	3 cut(s)	512, 823, 856
AvaII	GGWCC	2 cut(s)	160, 585
BamHI	GGATCC	1 cut(s)	575
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	371, 718
BccI	CCATC	7 cut(s)	41, 567, 598, 635, 713, 796, 854
BclI	TGATCA	2 cut(s)	13, 682
BcnI	CCSGG	2 cut(s)	356, 903
BcoDI	GTCTC	1 cut(s)	322
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	462, 479
BisI	GCNGC	2 cut(s)	360, 732
BlsI	GCNGC	2 cut(s)	361, 733
Bme1390I	CCNGG	2 cut(s)	356, 903
Bme18I	GGWCC	2 cut(s)	160, 585
BmgT120I	GGNCC	4 cut(s)	160, 527, 585, 741
BmiI	GGNNCC	2 cut(s)	52, 577
BmrFI	CCNGG	2 cut(s)	356, 903
BmsI	GCATC	2 cut(s)	361, 370
BoxI	GACNNNNGTC	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu10I	CCTNAGC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	424
BpuMI	CCSGG	2 cut(s)	356, 903
BsaJI	CCNNGG	8 cut(s)	84, 156, 176, 187, 226, 321, 523, 744
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 156, 186, 336, 366
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 355, 569, 707
Bse1I	ACTGG	1 cut(s)	395
BseDI	CCNNGG	8 cut(s)	84, 156, 176, 187, 226, 321, 523, 744
BseGI	GGATG	3 cut(s)	129, 376, 559
BseLI	CCNNNNNNNGG	4 cut(s)	157, 355, 569, 707
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	2 cut(s)	371, 718
BseYI	CCCAGC	1 cut(s)	491
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	89, 529, 743
BsiSI	CCGG	2 cut(s)	356, 902
BslI	CCNNNNNNNGG	4 cut(s)	157, 355, 569, 707
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	89, 529, 743
Bsp143I	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
Bsp19I	CCATGG	2 cut(s)	156, 744
BspACI	CCGC	1 cut(s)	349
BspANI	GGCC	3 cut(s)	89, 529, 743
BspCNI	CTCAG	1 cut(s)	113
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	2 cut(s)	271, 685
BspLI	GGNNCC	2 cut(s)	52, 577
BspPI	GGATC	4 cut(s)	401, 570, 583, 776
BsrI	ACTGG	1 cut(s)	395
BssECI	CCNNGG	8 cut(s)	84, 156, 176, 187, 226, 321, 523, 744
BssMI	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
BssT1I	CCWWGG	4 cut(s)	156, 187, 523, 744
Bst4CI	ACNGT	6 cut(s)	230, 265, 332, 680, 706, 844
Bst6I	CTCTTC	2 cut(s)	173, 405
BstC8I	GCNNGC	1 cut(s)	637
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	4 cut(s)	156, 226, 321, 744
BstF5I	GGATG	3 cut(s)	129, 376, 559
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	63, 254
BstKTI	GATC	7 cut(s)	16, 396, 520, 578, 616, 685, 784
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 488, 740
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	354, 901
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	2 cut(s)	371, 718
BstX2I	RGATCY	2 cut(s)	575, 781
BstYI	RGATCY	2 cut(s)	575, 781
BsuRI	GGCC	3 cut(s)	89, 529, 743
BtgI	CCRYGG	4 cut(s)	156, 226, 321, 744
BtgZI	GCGATG	2 cut(s)	654, 873
BtsCI	GGATG	3 cut(s)	129, 376, 559
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	637
CciI	TCATGA	2 cut(s)	271, 685
CfoI	GCGC	2 cut(s)	63, 254
Cfr13I	GGNCC	4 cut(s)	160, 527, 585, 741
Csp6I	GTAC	4 cut(s)	116, 459, 836, 934
CviQI	GTAC	4 cut(s)	116, 459, 836, 934
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	7 cut(s)	15, 395, 519, 577, 615, 684, 783
DpnII	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
Eam1104I	CTCTTC	2 cut(s)	173, 405
EarI	CTCTTC	2 cut(s)	173, 405
Eco130I	CCWWGG	4 cut(s)	156, 187, 523, 744
Eco47I	GGWCC	2 cut(s)	160, 585
Eco57I	CTGAAG	1 cut(s)	620
EcoT14I	CCWWGG	4 cut(s)	156, 187, 523, 744
ErhI	CCWWGG	4 cut(s)	156, 187, 523, 744
FbaI	TGATCA	2 cut(s)	13, 682
FblI	GTMKAC	1 cut(s)	915
Fnu4HI	GCNGC	2 cut(s)	360, 732
FokI	GGATG	3 cut(s)	116, 383, 546
Fsp4HI	GCNGC	2 cut(s)	360, 732
FspBI	CTAG	2 cut(s)	462, 479
GlaI	GCGC	2 cut(s)	62, 253
GluI	GCNGC	2 cut(s)	360, 732
GsaI	CCCAGC	1 cut(s)	495
HaeIII	GGCC	3 cut(s)	89, 529, 743
HapII	CCGG	2 cut(s)	356, 902
HhaI	GCGC	2 cut(s)	63, 254
Hin6I	GCGC	2 cut(s)	61, 252
HinP1I	GCGC	2 cut(s)	61, 252
HincII	GTYRAC	1 cut(s)	916
HindII	GTYRAC	1 cut(s)	916
HinfI	GANTC	5 cut(s)	92, 165, 590, 736, 847
HpaII	CCGG	2 cut(s)	356, 902
HphI	GGTGA	3 cut(s)	512, 823, 856
Hpy166II	GTNNAC	4 cut(s)	139, 325, 836, 916
Hpy188I	TCNGA	5 cut(s)	164, 180, 580, 595, 786
Hpy188III	TCNNGA	4 cut(s)	44, 272, 397, 686
Hpy8I	GTNNAC	4 cut(s)	139, 325, 836, 916
HpyAV	CCTTC	1 cut(s)	823
HpyCH4III	ACNGT	6 cut(s)	230, 265, 332, 680, 706, 844
HpyCH4V	TGCA	3 cut(s)	388, 556, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 488, 740
HpyF3I	CTNAG	1 cut(s)	100
HspAI	GCGC	2 cut(s)	61, 252
Ksp22I	TGATCA	2 cut(s)	13, 682
Kzo9I	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
LmnI	GCTCC	3 cut(s)	607, 644, 904
Lsp1109I	GCAGC	2 cut(s)	371, 718
LweI	GCATC	2 cut(s)	361, 370
MaeI	CTAG	2 cut(s)	462, 479
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	7 cut(s)	15, 395, 519, 577, 615, 684, 783
MboI	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
MboII	GAAGA	3 cut(s)	160, 422, 613
MflI	RGATCY	2 cut(s)	575, 781
MluCI	AATT	6 cut(s)	17, 71, 425, 618, 653, 924
MlyI	GAGTC	4 cut(s)	86, 159, 599, 841
MmeI	TCCRAC	4 cut(s)	187, 309, 573, 725
MroXI	GAANNNNTTC	1 cut(s)	926
MseI	TTAA	2 cut(s)	68, 452
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	2 cut(s)	356, 902
MspR9I	CCNGG	2 cut(s)	356, 903
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	3 cut(s)	380, 488, 740
NciI	CCSGG	2 cut(s)	356, 903
NcoI	CCATGG	2 cut(s)	156, 744
NdeII	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
NlaIV	GGNNCC	2 cut(s)	52, 577
NmuCI	GTSAC	1 cut(s)	844
OliI	CACNNNNGTG	1 cut(s)	231
PagI	TCATGA	2 cut(s)	271, 685
PdmI	GAANNNNTTC	1 cut(s)	926
PfeI	GAWTC	1 cut(s)	736
PflFI	GACNNNGTC	1 cut(s)	589
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	361, 733
PleI	GAGTC	4 cut(s)	86, 159, 598, 841
PpsI	GAGTC	4 cut(s)	86, 159, 598, 841
PshAI	GACNNNNGTC	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	491
PspN4I	GGNNCC	2 cut(s)	52, 577
PspPI	GGNCC	4 cut(s)	160, 527, 585, 741
PsuI	RGATCY	2 cut(s)	575, 781
PsyI	GACNNNGTC	1 cut(s)	589
RsaI	GTAC	4 cut(s)	117, 460, 837, 935
RsaNI	GTAC	4 cut(s)	116, 459, 836, 934
RseI	CAYNNNNRTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	914
SaqAI	TTAA	2 cut(s)	68, 452
SatI	GCNGC	2 cut(s)	360, 732
Sau3AI	GATC	7 cut(s)	13, 393, 517, 575, 613, 682, 781
Sau96I	GGNCC	4 cut(s)	160, 527, 585, 741
SchI	GAGTC	4 cut(s)	86, 159, 599, 841
ScrFI	CCNGG	2 cut(s)	356, 903
SetI	ASST	9 cut(s)	13, 56, 101, 310, 446, 480, 484, 525, 901
SfaNI	GCATC	2 cut(s)	361, 370
SinI	GGWCC	2 cut(s)	160, 585
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	6 cut(s)	17, 71, 425, 618, 653, 924
SsiI	CCGC	1 cut(s)	349
SspMI	CTAG	2 cut(s)	462, 479
StyD4I	CCNGG	2 cut(s)	354, 901
StyI	CCWWGG	4 cut(s)	156, 187, 523, 744
TaaI	ACNGT	6 cut(s)	230, 265, 332, 680, 706, 844
TaqI	TCGA	2 cut(s)	616, 915
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	6 cut(s)	17, 71, 425, 618, 653, 924
TatI	WGTACW	2 cut(s)	115, 933
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	2 cut(s)	68, 452
Tru9I	TTAA	2 cut(s)	68, 452
TscAI	CASTG	1 cut(s)	395
TseFI	GTSAC	1 cut(s)	844
TseI	GCWGC	2 cut(s)	359, 731
Tsp45I	GTSAC	1 cut(s)	844
TspDTI	ATGAA	2 cut(s)	260, 919
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	395
Tth111I	GACNNNGTC	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	160, 585
XapI	RAATTY	4 cut(s)	71, 425, 618, 924
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 566
XmiI	GTMKAC	1 cut(s)	915
XmnI	GAANNNNTTC	1 cut(s)	926
XspI	CTAG	2 cut(s)	462, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.