Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003884.1

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Forward (+)

31623 .. 32048

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003884.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgagtagaaaccttaacaatcataccagtcaaagtgagtcgtctcaactggcgacattcacaattcatccatccaagtcgcataagactaccactttcacaacattaggggcaaacatcactaagcaaggaagttcaacatacttaagcgattcaagagaatattctccttcgcctactgccagtgttgatctgcgtacacccctatgccccatttcgtcttcagataaccaaacagatgggaatttggaagatgcctcttttgctatgaaagtcatggtgataggggtcaccagcgtgaaagaacagacgacccaaatagctcaattggctgaagcagttgagaagctacaaaaaactattgaagagaaggatatggaaattggtgcgctcatggagaggttaattagaaactcaatgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002791 GO:0002793 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009755 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016021 GO:0016500 GO:0019221 GO:0019395 GO:0019752 GO:0019827 GO:0023051 GO:0023052 GO:0023056 GO:0030258 GO:0030718 GO:0031224 GO:0032024 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0032879 GO:0032880 GO:0033211 GO:0033500 GO:0034097 GO:0034440 GO:0036099 GO:0038023 GO:0042221 GO:0042562 GO:0042592 GO:0042593 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044425 GO:0044464 GO:0046883 GO:0046887 GO:0048518 GO:0048522 GO:0048878 GO:0050708 GO:0050714 GO:0050789 GO:0050794 GO:0050796 GO:0050896 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051716 GO:0055088 GO:0055090 GO:0055114 GO:0060089 GO:0065007 GO:0065008 GO:0070201 GO:0070328 GO:0070887 GO:0071310 GO:0071345 GO:0071495 GO:0071704 GO:0071944 GO:0090087 GO:0090276 GO:0090277 GO:0098727 GO:1903530 GO:1903532 GO:1904951

KEGG Pathways

Metabolic & Signaling

ko04152 ko04211 ko04920 ko04932 map04152 map04211 map04920 map04932

Pfam Domains

Protein Families

HlyIII

Protein Analysis

141

Amino Acids

15.5

Weight (kDa)

5.57

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	2 cut(s)	207, 354
AfaI	GTAC	1 cut(s)	199
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	138, 156, 365
AleI	CACNNNNGTG	1 cut(s)	296
AluBI	AGCT	2 cut(s)	323, 349
AluI	AGCT	2 cut(s)	323, 349
Alw26I	GTCTC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	244
AspLEI	GCGC	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	283, 292
BbsI	GAAGAC	1 cut(s)	213
BccI	CCATC	2 cut(s)	79, 233
BcoDI	GTCTC	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	213
Bse1I	ACTGG	3 cut(s)	27, 54, 183
BseGI	GGATG	2 cut(s)	67, 71
BseNI	ACTGG	3 cut(s)	27, 54, 183
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	190
BspTI	CTTAAG	1 cut(s)	145
BsrI	ACTGG	3 cut(s)	27, 54, 183
BssMI	GATC	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	123
BstEII	GGTNACC	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	67, 71
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 329
BstPI	GGTNACC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	67, 71
BtsIMutI	CAGTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	391
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	2 cut(s)	277, 394
CviJI	RGCY	3 cut(s)	323, 332, 349
CviKI_1	RGCY	3 cut(s)	323, 332, 349
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco57I	CTGAAG	2 cut(s)	207, 354
Eco91I	GGTNACC	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	2 cut(s)	280, 397
FaiI	YATR	8 cut(s)	24, 84, 142, 208, 269, 278, 377, 395
FatI	CATG	2 cut(s)	276, 393
FokI	GGATG	2 cut(s)	54, 58
GlaI	GCGC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	391
Hin1II	CATG	2 cut(s)	280, 397
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	2 cut(s)	38, 152
HphI	GGTGA	2 cut(s)	283, 292
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	180, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 329
HpyF3I	CTNAG	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	280, 397
HspAI	GCGC	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	4 cut(s)	35, 40, 196, 307
LweI	GCATC	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	213, 263, 377
MfeI	CAATTG	1 cut(s)	326
MluCI	AATT	5 cut(s)	63, 244, 326, 381, 405
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	2 cut(s)	268, 393
MseI	TTAA	3 cut(s)	15, 146, 404
MslI	CAYNNNNRTG	2 cut(s)	205, 296
MspCI	CTTAAG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	263, 329
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	280, 397
NmuCI	GTSAC	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	152
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	289
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	2 cut(s)	205, 296
SaqAI	TTAA	3 cut(s)	15, 146, 404
Sau3AI	GATC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	47
SetI	ASST	4 cut(s)	15, 325, 351, 404
SfaNI	GCATC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	205, 296
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	5 cut(s)	63, 244, 326, 381, 405
SspI	AATATT	1 cut(s)	164
TasI	AATT	5 cut(s)	63, 244, 326, 381, 405
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	3 cut(s)	15, 146, 404
Tru9I	TTAA	3 cut(s)	15, 146, 404
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	56, 284
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.