Rmu_sc0017121.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017121.1
OG0000860
Physical Location & Seq
Forward (+)
1376 .. 1807
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017121.1_g000002.1.cds

Sequence Viewer

Length: 432 bp
atgagtagaaaccttaacaatcataccgttcggagtgagtcgtctcaactcgcgacattcataactcatccatctcagtcacgtcagccgatcgtcacttcgacaacaatgggggcaaacctcactaagaaaagatggtcaacatgctcaagcgactcaagggaacattcttcctcgcacactgccagtgttgatcggcgtgcacacctacgccctagttcgtcttttgataaccaaacggaagagacattggaagattcctcttttgctatgcaagtcatggtagtaggggtcaccaccttggaagaacagacgactcaaatagcccaattggctgaagcagttgagaagcaacagaaaactattgaagagaaggatatatatggaaattgctgcgctcatggagaagttagaaactcaacgtggcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.02

Weight (kDa)

6.29

Isoelectric Point (pI)

66.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 357
AgsI TTSAA 1 cut(s) 368
AjiI CACGTC 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 2 cut(s) 48, 239
Alw44I GTGCAC 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 393
AspLEI GCGC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 286
BaeGI GKGCMC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 380
BccI CCATC 2 cut(s) 79, 129
BcoDI GTCTC 2 cut(s) 48, 239
BfaI CTAG 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 332
BisI GCNGC 1 cut(s) 394
BlsI GCNGC 1 cut(s) 395
BmgBI CACGTC 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 133, 142
BsaJI CCNNGG 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 53
Bsh1285I CGRYCG 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 48, 239
BsmBI CGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 90, 193
Bsp68I TCGCGA 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 53
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 2 cut(s) 90, 193
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 237, 363
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 75, 126
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 2 cut(s) 93, 196
BstMAI GTCTC 2 cut(s) 48, 239
BstMBI GATC 2 cut(s) 90, 193
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 147
BstPI GGTNACC 1 cut(s) 292
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 380
BtrI CACGTC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 67
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 193
BtuMI TCGCGA 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 398
CviAII CATG 3 cut(s) 144, 280, 401
CviJI RGCY 3 cut(s) 88, 326, 335
CviKI_1 RGCY 3 cut(s) 88, 326, 335
DdeI CTNAG 2 cut(s) 75, 126
DpnI GATC 2 cut(s) 92, 195
DpnII GATC 2 cut(s) 90, 193
Eam1104I CTCTTC 2 cut(s) 237, 363
EarI CTCTTC 2 cut(s) 237, 363
Eco130I CCWWGG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 357
Eco91I GGTNACC 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 3 cut(s) 147, 283, 404
FaiI YATR 9 cut(s) 24, 62, 145, 272, 281, 380, 382, 384, 402
FatI CATG 3 cut(s) 143, 279, 400
Fnu4HI GCNGC 1 cut(s) 394
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 394
FspBI CTAG 1 cut(s) 216
GlaI GCGC 1 cut(s) 397
GluI GCNGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 398
Hin1II CATG 3 cut(s) 147, 283, 404
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 4 cut(s) 38, 155, 257, 316
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 141, 203
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 141, 203
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 82, 422
HpyCH4V TGCA 2 cut(s) 203, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 75, 126
HpySE526I ACGT 2 cut(s) 82, 422
Hsp92II CATG 3 cut(s) 147, 283, 404
HspAI GCGC 1 cut(s) 396
Kzo9I GATC 2 cut(s) 90, 193
LpnPI CCDG 1 cut(s) 199
Lsp1109I GCAGC 1 cut(s) 380
MaeI CTAG 1 cut(s) 216
MaeII ACGT 2 cut(s) 82, 422
MaeIII GTNAC 3 cut(s) 78, 94, 292
MalI GATC 2 cut(s) 92, 195
MboI GATC 2 cut(s) 90, 193
MboII GAAGA 5 cut(s) 162, 254, 266, 317, 380
MfeI CAATTG 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 2 cut(s) 329, 388
MlyI GAGTC 3 cut(s) 47, 149, 310
MnlI CCTC 3 cut(s) 131, 184, 271
MseI TTAA 1 cut(s) 15
MunI CAATTG 1 cut(s) 329
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 2 cut(s) 90, 193
NlaIII CATG 3 cut(s) 147, 283, 404
NmuCI GTSAC 3 cut(s) 78, 94, 292
NruI TCGCGA 1 cut(s) 53
NspI RCATGY 1 cut(s) 147
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 1 cut(s) 395
Ple19I CGATCG 1 cut(s) 93
PleI GAGTC 3 cut(s) 46, 149, 310
PpsI GAGTC 3 cut(s) 46, 149, 310
PspEI GGTNACC 1 cut(s) 292
PvuI CGATCG 1 cut(s) 93
RruI TCGCGA 1 cut(s) 53
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 1 cut(s) 394
Sau3AI GATC 2 cut(s) 90, 193
SchI GAGTC 3 cut(s) 47, 149, 310
SduI GDGCHC 1 cut(s) 205
SetI ASST 6 cut(s) 15, 85, 123, 210, 302, 425
SmlI CTYRAG 2 cut(s) 148, 157
SmoI CTYRAG 2 cut(s) 148, 157
Sse9I AATT 2 cut(s) 329, 388
SspMI CTAG 1 cut(s) 216
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 2 cut(s) 85, 425
TaqI TCGA 1 cut(s) 101
TasI AATT 2 cut(s) 329, 388
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 187, 193
TseFI GTSAC 3 cut(s) 78, 94, 292
TseI GCWGC 1 cut(s) 393
Tsp45I GTSAC 3 cut(s) 78, 94, 292
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 2 cut(s) 187, 193
VneI GTGCAC 1 cut(s) 201
XceI RCATGY 1 cut(s) 147
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.