Rmu_ssc0000309.1_g000064

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000309.1
OG0000860
Physical Location & Seq
Forward (+)
291763 .. 292221
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000309.1_g000064.1.cds

Sequence Viewer

Length: 459 bp
atgaccaataaggttgctgctctaaaaatgagtagaaaccttaacaatcataccgttcggagtgagtcgtctcaactcgcgacattcataactcatccatctcagtcacgtcagtcgatcatcacttcgacaacaatgggggcaaacctcactaagaaaagatggtcaacatgctcaagcgactcaagggaacattcttcctcgcacactgccagtgttgatccgcgtacacacatactccccaaattgtctcttgataaccaaacgaaagagattttggaagacgcctctttcgctatgcaagtcatggtgattggagtcaccaccgtggaagaacaagtgacccaaatagcccaattggttgaaacagttgagaagctacagaagactattgaagagaaggaaatggaaattgctgcgctcatggagaagctagaaattcaacatggcgatgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag

Protein Analysis

152

Amino Acids

16.97

Weight (kDa)

5.86

Isoelectric Point (pI)

60.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 80, 226
AciI CCGC 1 cut(s) 224
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 1 cut(s) 438
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 3 cut(s) 365, 395, 443
AjiI CACGTC 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 2 cut(s) 379, 433
AluI AGCT 2 cut(s) 379, 433
Alw26I GTCTC 2 cut(s) 75, 255
AlwI GGATC 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 17, 416
ApoI RAATTY 1 cut(s) 438
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 313, 322
BbsI GAAGAC 2 cut(s) 288, 392
BbvI GCAGC 2 cut(s) 4, 403
BccI CCATC 2 cut(s) 106, 156
BcoDI GTCTC 2 cut(s) 75, 255
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 380
BisI GCNGC 2 cut(s) 18, 417
BlsI GCNGC 2 cut(s) 19, 418
BmgBI CACGTC 1 cut(s) 110
BpiI GAAGAC 2 cut(s) 288, 392
BpuEI CTTGAG 2 cut(s) 160, 169
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 327
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 94
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 4, 403
Bsh1236I CGCG 2 cut(s) 80, 226
BsmAI GTCTC 2 cut(s) 75, 255
BsmBI CGTCTC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 117, 220
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 115
BspFNI CGCG 2 cut(s) 80, 226
BspPI GGATC 1 cut(s) 215
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 327
BssMI GATC 2 cut(s) 117, 220
BssNI GRCGYC 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 55, 328, 370
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 102, 153
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 94
BstFNI CGCG 2 cut(s) 80, 226
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 2 cut(s) 120, 223
BstMAI GTCTC 2 cut(s) 75, 255
BstMBI GATC 2 cut(s) 117, 220
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 380
BstUI CGCG 2 cut(s) 80, 226
BstV1I GCAGC 2 cut(s) 4, 403
BstV2I GAAGAC 2 cut(s) 288, 392
BtgI CCRYGG 1 cut(s) 327
BtrI CACGTC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 207, 220
BtuMI TCGCGA 1 cut(s) 80
CfoI GCGC 1 cut(s) 421
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 228
CviAII CATG 4 cut(s) 171, 307, 424, 446
CviJI RGCY 3 cut(s) 353, 379, 433
CviKI_1 RGCY 3 cut(s) 353, 379, 433
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 102, 153
DpnI GATC 2 cut(s) 119, 222
DpnII GATC 2 cut(s) 117, 220
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 4 cut(s) 174, 310, 427, 449
FaiI YATR 8 cut(s) 51, 89, 172, 236, 299, 308, 425, 447
FatI CATG 4 cut(s) 170, 306, 423, 445
Fnu4HI GCNGC 2 cut(s) 18, 417
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 2 cut(s) 18, 417
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 420
GluI GCNGC 2 cut(s) 18, 417
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 4 cut(s) 174, 310, 427, 449
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 3 cut(s) 65, 182, 318
HphI GGTGA 2 cut(s) 313, 322
Hpy166II GTNNAC 2 cut(s) 168, 230
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 2 cut(s) 79, 254
Hpy8I GTNNAC 2 cut(s) 168, 230
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 3 cut(s) 55, 328, 370
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 2 cut(s) 102, 153
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 4 cut(s) 174, 310, 427, 449
HspAI GCGC 1 cut(s) 419
Kzo9I GATC 2 cut(s) 117, 220
LpnPI CCDG 1 cut(s) 226
Lsp1109I GCAGC 2 cut(s) 4, 403
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 3 cut(s) 105, 319, 340
MalI GATC 2 cut(s) 119, 222
MboI GATC 2 cut(s) 117, 220
MboII GAAGA 5 cut(s) 189, 293, 344, 397, 407
MfeI CAATTG 1 cut(s) 356
MluCI AATT 4 cut(s) 245, 356, 411, 438
MlyI GAGTC 3 cut(s) 74, 176, 327
MnlI CCTC 3 cut(s) 158, 211, 298
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 2 cut(s) 326, 450
MunI CAATTG 1 cut(s) 356
MvnI CGCG 2 cut(s) 80, 226
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 2 cut(s) 117, 220
NlaIII CATG 4 cut(s) 174, 310, 427, 449
NmuCI GTSAC 3 cut(s) 105, 319, 340
NruI TCGCGA 1 cut(s) 80
NspI RCATGY 1 cut(s) 174
OliI CACNNNNGTG 1 cut(s) 326
PkrI GCNGC 2 cut(s) 19, 418
PleI GAGTC 3 cut(s) 73, 176, 326
PpsI GAGTC 3 cut(s) 73, 176, 326
RruI TCGCGA 1 cut(s) 80
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 326, 450
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 2 cut(s) 18, 417
Sau3AI GATC 2 cut(s) 117, 220
SchI GAGTC 3 cut(s) 74, 176, 327
SetI ASST 6 cut(s) 15, 42, 112, 150, 381, 435
SfcI CTRYAG 1 cut(s) 380
SmiMI CAYNNNNRTG 2 cut(s) 326, 450
SmlI CTYRAG 2 cut(s) 175, 184
SmoI CTYRAG 2 cut(s) 175, 184
Sse9I AATT 4 cut(s) 245, 356, 411, 438
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 434
TaaI ACNGT 3 cut(s) 55, 328, 370
TaiI ACGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 116, 128
TasI AATT 4 cut(s) 245, 356, 411, 438
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 214, 220
TseFI GTSAC 3 cut(s) 105, 319, 340
TseI GCWGC 2 cut(s) 17, 416
Tsp45I GTSAC 3 cut(s) 105, 319, 340
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 2 cut(s) 214, 220
XapI RAATTY 1 cut(s) 438
XceI RCATGY 1 cut(s) 174
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.