Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Forward (+)

28267099 .. 28268307

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCCAATTTGATTCCCAACCCAGACGGCACATACACCCGTCTCATAACACTTCCAATCGTACCAGCCCAGCCCGACCCATCCTCTTCAACCACTCGGGTCCTCTCCAAAGACATCTCGGTAAATCCGAAAACCGAAACCATGGTACGACTATTCCTACCCCGTGAGGTCCTCGATTTACCCGCCCCTAGAATCCCTATCATTTTTTACTACCACGGTGGCGCTTTTATTTTCCTCAGTGCCACGTCATCCATCTTCCACGAATTCTGTTCTACCATGGCTCTCCAACTCCAAGTCCTCATCGTCTCCCTAGAGTACCGCCTCGCACCCGAACATCGTCTCCCCGCGGCTTATGACGACGCCGTGGATGCGCTGCACTGGATTAAAACCACCAAAGAAGAGTGGATCGCAAAATTTGCTGATCTTTCCAATTGTTTCTTAATGGGTACGAGTTCCGGTGGGAACCTGGCTTACCATGCTGGGCTTCGCGCTTGTGAAGTGAGTCATCATCTTGACCCTCTGAAAATCAAAGGGCTGATATTGCACCATCCATTCTTTGGTGGGTCTGAGAGGACCGGGTCGGAGCTGGTCATGGAGGATGACCCGATTTTGCCACCTCGCGTCTGTGATGCAGCGTGGAAATGGGTGTTGCCTGTGGGCGCAGACCGTGACCATGAGTATTGCAATCCGGCGGTAAGTAAAGAATTCGAGCGTTGCGTTGCGATTCGGGTAATGGGTTGTCGGGTCTTGGTTGCGGGTTGTTTCGGGGACCCATTGATTGACCGTCAGATGGAGTTGGGGAAGATGTTAGAGGGGAAAGGTGTACGGACAATGACCCATTTTGGCAATGGTTTTCATGGTTTGGAGGTATCTGACCCGTCCAAAGCCCCAGCCTTGTTCACCGTCTTGAAAAACTTCATATATGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

311

Amino Acids

34.45

Weight (kDa)

6.05

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccII	CGCG	3 cut(s)	347, 489, 621
AciI	CCGC	6 cut(s)	183, 319, 345, 347, 692, 755
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	263, 413, 704
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	5 cut(s)	63, 147, 317, 448, 825
AfiI	CCNNNNNNNGG	2 cut(s)	557, 790
AgsI	TTSAA	2 cut(s)	90, 910
AjiI	CACGTC	1 cut(s)	246
AjnI	CCWGG	1 cut(s)	465
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	1 cut(s)	586
AluI	AGCT	1 cut(s)	586
Alw26I	GTCTC	3 cut(s)	47, 310, 344
AlwI	GGATC	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	373, 632
ApoI	RAATTY	3 cut(s)	263, 413, 704
Asp700I	GAANNNNTTC	1 cut(s)	914
AspLEI	GCGC	4 cut(s)	224, 373, 491, 662
AspS9I	GGNCC	4 cut(s)	100, 169, 573, 769
AsuC2I	CCSGG	1 cut(s)	577
AsuHPI	GGTGA	1 cut(s)	892
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	4 cut(s)	100, 169, 573, 769
BbvI	GCAGC	2 cut(s)	360, 644
BccI	CCATC	4 cut(s)	88, 260, 555, 784
BceAI	ACGGC	2 cut(s)	43, 347
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	577
BcoDI	GTCTC	3 cut(s)	47, 310, 344
BfaI	CTAG	2 cut(s)	189, 311
BfoI	RGCGCY	1 cut(s)	225
BisI	GCNGC	3 cut(s)	348, 374, 633
BlsI	GCNGC	3 cut(s)	349, 375, 634
Bme1390I	CCNGG	2 cut(s)	467, 577
Bme18I	GGWCC	4 cut(s)	100, 169, 573, 769
BmeT110I	CYCGRG	1 cut(s)	96
BmgBI	CACGTC	1 cut(s)	246
BmgT120I	GGNCC	4 cut(s)	100, 169, 573, 769
BmiI	GGNNCC	4 cut(s)	101, 464, 770, 771
BmrFI	CCNGG	2 cut(s)	467, 577
BmsI	GCATC	2 cut(s)	358, 619
BpuMI	CCSGG	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	5 cut(s)	141, 214, 276, 345, 363
BsaWI	WCCGGW	1 cut(s)	455
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 790
Bse1I	ACTGG	1 cut(s)	383
Bse3DI	GCAATG	1 cut(s)	853
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	5 cut(s)	141, 214, 276, 345, 363
BseGI	GGATG	5 cut(s)	80, 248, 373, 547, 604
BseLI	CCNNNNNNNGG	2 cut(s)	557, 790
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	2 cut(s)	250, 558
BseNI	ACTGG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	360, 644
BseYI	CCCAGC	3 cut(s)	69, 479, 889
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	3 cut(s)	347, 489, 621
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	3 cut(s)	456, 576, 689
BslFI	GGGAC	1 cut(s)	782
BslI	CCNNNNNNNGG	2 cut(s)	557, 790
BsmAI	GTCTC	3 cut(s)	47, 310, 344
BsmBI	CGTCTC	3 cut(s)	47, 310, 344
BsmFI	GGGAC	1 cut(s)	782
BsoBI	CYCGRG	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	405, 421
Bsp19I	CCATGG	2 cut(s)	141, 276
BspACI	CCGC	6 cut(s)	183, 319, 345, 347, 692, 755
BspCNI	CTCAG	2 cut(s)	249, 559
BspFNI	CGCG	3 cut(s)	347, 489, 621
BspLI	GGNNCC	4 cut(s)	101, 464, 770, 771
BspPI	GGATC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	853
BsrI	ACTGG	1 cut(s)	383
BssECI	CCNNGG	5 cut(s)	141, 214, 276, 345, 363
BssMI	GATC	2 cut(s)	405, 421
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	141, 276
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	4 cut(s)	218, 668, 785, 904
Bst6I	CTCTTC	2 cut(s)	91, 393
BstACI	GRCGYC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	236, 567
BstDSI	CCRYGG	5 cut(s)	141, 214, 276, 345, 363
BstF5I	GGATG	5 cut(s)	80, 248, 373, 547, 604
BstFNI	CGCG	3 cut(s)	347, 489, 621
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	4 cut(s)	224, 373, 491, 662
BstKTI	GATC	2 cut(s)	408, 424
BstMAI	GTCTC	3 cut(s)	47, 310, 344
BstMBI	GATC	2 cut(s)	405, 421
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 416, 476, 541
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	465, 575
BstUI	CGCG	3 cut(s)	347, 489, 621
BstV1I	GCAGC	2 cut(s)	360, 644
BtgI	CCRYGG	5 cut(s)	141, 214, 276, 345, 363
BtrI	CACGTC	1 cut(s)	246
BtsCI	GGATG	5 cut(s)	80, 248, 373, 547, 604
BtsIMutI	CAGTG	2 cut(s)	244, 376
CfoI	GCGC	4 cut(s)	224, 373, 491, 662
Cfr13I	GGNCC	4 cut(s)	100, 169, 573, 769
Cfr42I	CCGCGG	1 cut(s)	348
CseI	GACGC	2 cut(s)	368, 610
Csp6I	GTAC	5 cut(s)	62, 146, 316, 447, 824
CviAII	CATG	6 cut(s)	142, 277, 476, 592, 674, 857
CviQI	GTAC	5 cut(s)	62, 146, 316, 447, 824
DdeI	CTNAG	2 cut(s)	236, 567
DpnI	GATC	2 cut(s)	407, 423
DpnII	GATC	2 cut(s)	405, 421
Eam1104I	CTCTTC	2 cut(s)	91, 393
EarI	CTCTTC	2 cut(s)	91, 393
Eco130I	CCWWGG	2 cut(s)	141, 276
Eco47I	GGWCC	4 cut(s)	100, 169, 573, 769
Eco88I	CYCGRG	1 cut(s)	96
EcoO109I	RGGNCCY	3 cut(s)	100, 169, 769
EcoRI	GAATTC	2 cut(s)	263, 704
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	141, 276
ErhI	CCWWGG	2 cut(s)	141, 276
Esp3I	CGTCTC	3 cut(s)	47, 310, 344
FaeI	CATG	6 cut(s)	145, 280, 479, 595, 677, 860
FaqI	GGGAC	1 cut(s)	782
FatI	CATG	6 cut(s)	141, 276, 475, 591, 673, 856
FauI	CCCGC	3 cut(s)	190, 352, 748
Fnu4HI	GCNGC	3 cut(s)	348, 374, 633
FokI	GGATG	5 cut(s)	67, 235, 380, 534, 611
Fsp4HI	GCNGC	3 cut(s)	348, 374, 633
FspBI	CTAG	2 cut(s)	189, 311
GlaI	GCGC	4 cut(s)	223, 372, 490, 661
GluI	GCNGC	3 cut(s)	348, 374, 633
GsaI	CCCAGC	3 cut(s)	73, 483, 893
HaeII	RGCGCY	1 cut(s)	225
HapII	CCGG	3 cut(s)	456, 576, 689
HgaI	GACGC	2 cut(s)	368, 610
HhaI	GCGC	4 cut(s)	224, 373, 491, 662
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	6 cut(s)	145, 280, 479, 595, 677, 860
Hin6I	GCGC	4 cut(s)	222, 371, 489, 660
HinP1I	GCGC	4 cut(s)	222, 371, 489, 660
HinfI	GANTC	4 cut(s)	13, 192, 502, 724
HpaII	CCGG	3 cut(s)	456, 576, 689
HphI	GGTGA	1 cut(s)	892
Hpy166II	GTNNAC	2 cut(s)	824, 900
Hpy188I	TCNGA	6 cut(s)	129, 522, 568, 583, 789, 874
Hpy188III	TCNNGA	2 cut(s)	512, 907
Hpy8I	GTNNAC	2 cut(s)	824, 900
Hpy99I	CGWCG	1 cut(s)	362
HpyCH4III	ACNGT	4 cut(s)	218, 668, 785, 904
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	376, 544, 632, 684
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 416, 476, 541
HpyF3I	CTNAG	2 cut(s)	236, 567
HpySE526I	ACGT	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	6 cut(s)	145, 280, 479, 595, 677, 860
HspAI	GCGC	4 cut(s)	222, 371, 489, 660
KflI	GGGWCCC	1 cut(s)	769
KspI	CCGCGG	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	405, 421
LmnI	GCTCC	1 cut(s)	583
Lsp1109I	GCAGC	2 cut(s)	360, 644
LweI	GCATC	2 cut(s)	358, 619
MaeI	CTAG	2 cut(s)	189, 311
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	2 cut(s)	407, 423
MboI	GATC	2 cut(s)	405, 421
MboII	GAAGA	4 cut(s)	78, 247, 410, 814
MfeI	CAATTG	1 cut(s)	430
MluCI	AATT	6 cut(s)	7, 263, 413, 430, 704, 926
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	2 cut(s)	310, 561
MroXI	GAANNNNTTC	1 cut(s)	914
MseI	TTAA	2 cut(s)	384, 440
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	3 cut(s)	456, 576, 689
MspR9I	CCNGG	2 cut(s)	467, 577
MunI	CAATTG	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	3 cut(s)	347, 489, 621
MwoI	GCNNNNNNNGC	4 cut(s)	368, 416, 476, 541
NciI	CCSGG	1 cut(s)	577
NcoI	CCATGG	2 cut(s)	141, 276
NdeII	GATC	2 cut(s)	405, 421
NlaIII	CATG	6 cut(s)	145, 280, 479, 595, 677, 860
NlaIV	GGNNCC	4 cut(s)	101, 464, 770, 771
NmuCI	GTSAC	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 714
PdmI	GAANNNNTTC	1 cut(s)	914
PfeI	GAWTC	3 cut(s)	13, 192, 724
PflFI	GACNNNGTC	1 cut(s)	577
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	3 cut(s)	349, 375, 634
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
PpuMI	RGGWCCY	3 cut(s)	100, 169, 769
PsiI	TTATAA	1 cut(s)	931
Psp5II	RGGWCCY	3 cut(s)	100, 169, 769
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	3 cut(s)	69, 479, 889
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	101, 464, 770, 771
PspPI	GGNCC	4 cut(s)	100, 169, 573, 769
PspPPI	RGGWCCY	3 cut(s)	100, 169, 769
PsrI	GAACNNNNNNTAC	2 cut(s)	455, 487
PsyI	GACNNNGTC	1 cut(s)	577
RsaI	GTAC	5 cut(s)	63, 147, 317, 448, 825
RsaNI	GTAC	5 cut(s)	62, 146, 316, 447, 824
SacII	CCGCGG	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	384, 440
SatI	GCNGC	3 cut(s)	348, 374, 633
Sau3AI	GATC	2 cut(s)	405, 421
Sau96I	GGNCC	4 cut(s)	100, 169, 573, 769
SchI	GAGTC	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	467, 577
SetI	ASST	7 cut(s)	171, 248, 468, 588, 619, 823, 870
SfaNI	GCATC	2 cut(s)	358, 619
Sfr303I	CCGCGG	1 cut(s)	348
SgrBI	CCGCGG	1 cut(s)	348
SinI	GGWCC	4 cut(s)	100, 169, 573, 769
Sse9I	AATT	6 cut(s)	7, 263, 413, 430, 704, 926
SsiI	CCGC	6 cut(s)	183, 319, 345, 347, 692, 755
SspMI	CTAG	2 cut(s)	189, 311
StyD4I	CCNGG	2 cut(s)	465, 575
StyI	CCWWGG	2 cut(s)	141, 276
TaaI	ACNGT	4 cut(s)	218, 668, 785, 904
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	174, 708
TasI	AATT	6 cut(s)	7, 263, 413, 430, 704, 926
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	13, 192, 724
Tru1I	TTAA	2 cut(s)	384, 440
Tru9I	TTAA	2 cut(s)	384, 440
TscAI	CASTG	2 cut(s)	244, 383
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	2 cut(s)	373, 632
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	2 cut(s)	845, 907
TspGWI	ACGGA	1 cut(s)	841
TspRI	CASTG	2 cut(s)	244, 383
Tth111I	GACNNNGTC	1 cut(s)	577
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	4 cut(s)	100, 169, 573, 769
XapI	RAATTY	3 cut(s)	263, 413, 704
XcmI	CCANNNNNNNNNTGG	2 cut(s)	554, 845
XmnI	GAANNNNTTC	1 cut(s)	914
XspI	CTAG	2 cut(s)	189, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.