Rh7DG414600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000860
Physical Location & Seq
Reverse (-)
58292413 .. 58293528
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG414600.1

Sequence Viewer

Length: 309 bp
ATGACAGACAGAGTCTACCTGTCTTCCAAGGTTGTCACGAACGGCGCCGCCGCCGCCAACCCTACAGCCGTACGGCCACTAGCCCAAGTTCACCGTCACACCGCGGCCGCAATGGGAGTTCGTGGGTCAAGTCCAAGCCAGGTACTGCTGATGGGTTATCCTGGTGGTCTGGTTCGGATGATGAAGAAGACTCGCAGAAGAAGAAATGGTCCGGAGGTAATATTAGTTTCAAGGAGGCTTCGGACTAGCCGTGCAGAGCAGGAGAGAGAGAGAGAGAGAGATGGATTTGGCGCAAAGAGAGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.34

Weight (kDa)

11.75

Isoelectric Point (pI)

55.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 104
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 6 cut(s) 48, 51, 54, 102, 104, 108
AcoI YGGCCR 2 cut(s) 74, 105
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 72, 144
AgsI TTSAA 1 cut(s) 231
AjnI CCWGG 2 cut(s) 138, 160
AlwNI CAGNNNCTG 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 2 cut(s) 74, 105
AspLEI GCGC 2 cut(s) 47, 293
AspS9I GGNCC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 83
AvaII GGWCC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 15, 194
BccI CCATC 2 cut(s) 145, 275
BceAI ACGGC 4 cut(s) 53, 58, 89, 234
BciT130I CCWGG 2 cut(s) 140, 162
BfaI CTAG 2 cut(s) 80, 246
BfmI CTRYAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 48
BisI GCNGC 5 cut(s) 48, 51, 54, 105, 108
BlsI GCNGC 5 cut(s) 49, 52, 55, 106, 109
Bme1390I CCNGG 2 cut(s) 140, 162
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 140, 162
BpiI GAAGAC 2 cut(s) 15, 194
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 27, 102
BsaWI WCCGGW 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 211
BseBI CCWGG 2 cut(s) 140, 162
BseDI CCNNGG 2 cut(s) 27, 102
BseGI GGATG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 117
BseX3I CGGCCG 1 cut(s) 105
BsgI GTGCAG 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 76, 107
BshNI GGYRCC 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 1 cut(s) 212
BsiWI CGTACG 1 cut(s) 70
BsnI GGCC 2 cut(s) 76, 107
Bsp13I TCCGGA 1 cut(s) 211
BspACI CCGC 6 cut(s) 48, 51, 54, 102, 104, 108
BspANI GGCC 2 cut(s) 76, 107
BspEI TCCGGA 1 cut(s) 211
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 27, 102
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 2 cut(s) 140, 162
Bst4CI ACNGT 2 cut(s) 95, 306
BstACI GRCGYC 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 2 cut(s) 47, 293
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 140, 162
BstSCI CCNGG 2 cut(s) 138, 160
BstSFI CTRYAG 1 cut(s) 63
BstUI CGCG 1 cut(s) 104
BstV2I GAAGAC 2 cut(s) 15, 194
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 2 cut(s) 76, 107
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 145
CciNI GCGGCCGC 1 cut(s) 105
CfoI GCGC 2 cut(s) 47, 293
Cfr13I GGNCC 1 cut(s) 209
Cfr42I CCGCGG 1 cut(s) 105
Csp6I GTAC 2 cut(s) 71, 143
CviJI RGCY 7 cut(s) 68, 76, 83, 107, 138, 238, 249
CviKI_1 RGCY 7 cut(s) 68, 76, 83, 107, 138, 238, 249
CviQI GTAC 2 cut(s) 71, 143
DinI GGCGCC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 74, 105
EagI CGGCCG 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 209
Eco52I CGGCCG 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 138, 160
EcoT14I CCWWGG 1 cut(s) 27
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 48, 51, 54, 105, 108
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 5 cut(s) 48, 51, 54, 105, 108
FspBI CTAG 2 cut(s) 80, 246
GlaI GCGC 2 cut(s) 46, 292
GluI GCNGC 5 cut(s) 48, 51, 54, 105, 108
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 2 cut(s) 76, 107
HapII CCGG 1 cut(s) 212
HhaI GCGC 2 cut(s) 47, 293
Hin1I GRCGYC 1 cut(s) 45
Hin6I GCGC 2 cut(s) 45, 291
HinP1I GCGC 2 cut(s) 45, 291
HinfI GANTC 2 cut(s) 12, 190
HpaII CCGG 1 cut(s) 212
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 2 cut(s) 16, 91
Hpy188I TCNGA 2 cut(s) 177, 243
Hpy188III TCNNGA 2 cut(s) 37, 212
Hpy8I GTNNAC 2 cut(s) 16, 91
HpyCH4III ACNGT 2 cut(s) 95, 306
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 45
HspAI GCGC 2 cut(s) 45, 291
KasI GGCGCC 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 211
KspI CCGCGG 1 cut(s) 105
LpnPI CCDG 8 cut(s) 32, 125, 147, 152, 155, 174, 225, 245
MaeI CTAG 2 cut(s) 80, 246
MaeIII GTNAC 2 cut(s) 34, 95
MboII GAAGA 5 cut(s) 15, 196, 199, 210, 213
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 2 cut(s) 21, 184
MnlI CCTC 2 cut(s) 208, 228
MroI TCCGGA 1 cut(s) 211
MspA1I CMGCKG 1 cut(s) 104
MspI CCGG 1 cut(s) 212
MspR9I CCNGG 2 cut(s) 140, 162
MvaI CCWGG 2 cut(s) 140, 162
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 53
NarI GGCGCC 1 cut(s) 45
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 34, 95
NotI GCGGCCGC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 247
Pfl23II CGTACG 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 11
PkrI GCNGC 5 cut(s) 49, 52, 55, 106, 109
PleI GAGTC 2 cut(s) 20, 184
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 2 cut(s) 20, 184
Psp6I CCWGG 2 cut(s) 138, 160
PspGI CCWGG 2 cut(s) 138, 160
PspLI CGTACG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 2 cut(s) 72, 144
RsaNI GTAC 2 cut(s) 71, 143
SacII CCGCGG 1 cut(s) 105
SatI GCNGC 5 cut(s) 48, 51, 54, 105, 108
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 2 cut(s) 21, 184
ScrFI CCNGG 2 cut(s) 140, 162
SetI ASST 4 cut(s) 21, 33, 144, 219
SfcI CTRYAG 1 cut(s) 63
SfoI GGCGCC 1 cut(s) 46
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SinI GGWCC 1 cut(s) 209
SsiI CCGC 6 cut(s) 48, 51, 54, 102, 104, 108
SspDI GGCGCC 1 cut(s) 44
SspI AATATT 1 cut(s) 222
SspMI CTAG 2 cut(s) 80, 246
StyD4I CCNGG 2 cut(s) 138, 160
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 2 cut(s) 95, 306
TauI GCSGC 5 cut(s) 50, 53, 56, 107, 110
TseFI GTSAC 2 cut(s) 34, 95
Tsp45I GTSAC 2 cut(s) 34, 95
TspDTI ATGAA 1 cut(s) 197
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 80, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.