RchiOBHm_Chr7g0221361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000860
Physical Location & Seq
Reverse (-)
42382465 .. 42386342
3878 bp
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UTR
Exon/CDS
Intron
PRQ19807

Sequence Viewer

Length: 219 bp
ATGGCATCCAAGGTCAGCAACAAATTCAAGTCAAGAATTAAGGTAGGAGAAGAAAACTTGACATCCAAGCACCGCAGCAAATGTGACGATAAAATTAGGCAGCCTTGTCCCATACTTTTGAATTTTCAGTACAATACTATGGTGGCGGTCTCCATCTATGTTTTTTTTTTTTGGACTGATGCTAAACTAATGGAAGATTTAAATGATGTTTATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.5

Weight (kDa)

9.0

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 73, 146
AcsI RAATTY 2 cut(s) 23, 121
AfaI GTAC 1 cut(s) 131
AgsI TTSAA 2 cut(s) 28, 121
Alw26I GTCTC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 75, 100
ApoI RAATTY 2 cut(s) 23, 121
BbvI GCAGC 2 cut(s) 87, 112
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 154
BisI GCNGC 2 cut(s) 76, 101
BlsI GCNGC 2 cut(s) 77, 102
BmsI GCATC 2 cut(s) 14, 169
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 5, 62
BseXI GCAGC 2 cut(s) 87, 112
BslFI GGGAC 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 154
BspACI CCGC 2 cut(s) 73, 146
BspTNI GGTCTC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 5, 62
BstMAI GTCTC 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 87, 112
BtsCI GGATG 2 cut(s) 5, 62
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 1 cut(s) 103
CviKI_1 RGCY 1 cut(s) 103
CviQI GTAC 1 cut(s) 130
DraI TTTAAA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaiI YATR 3 cut(s) 113, 140, 159
FaqI GGGAC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 76, 101
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 76, 101
GluI GCNGC 2 cut(s) 76, 101
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 33
Lsp1109I GCAGC 2 cut(s) 87, 112
LweI GCATC 2 cut(s) 14, 169
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 2 cut(s) 62, 206
MluCI AATT 4 cut(s) 23, 36, 93, 121
MseI TTAA 2 cut(s) 39, 200
NmuCI GTSAC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 77, 102
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SaqAI TTAA 2 cut(s) 39, 200
SatI GCNGC 2 cut(s) 76, 101
SetI ASST 2 cut(s) 15, 45
SfaNI GCATC 2 cut(s) 14, 169
SgeI CNNG 6 cut(s) 22, 40, 45, 70, 79, 117
SmiI ATTTAAAT 1 cut(s) 201
Sse9I AATT 4 cut(s) 23, 36, 93, 121
SsiI CCGC 2 cut(s) 73, 146
StyI CCWWGG 1 cut(s) 9
SwaI ATTTAAAT 1 cut(s) 201
TasI AATT 4 cut(s) 23, 36, 93, 121
TatI WGTACW 1 cut(s) 129
Tru1I TTAA 2 cut(s) 39, 200
Tru9I TTAA 2 cut(s) 39, 200
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 2 cut(s) 75, 100
Tsp45I GTSAC 1 cut(s) 83
XapI RAATTY 2 cut(s) 23, 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.