Rroxscaffold_6G00390170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000860
Physical Location & Seq
Forward (+)
4734971 .. 4739549
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390170.1

Sequence Viewer

Length: 570 bp
ATGAGTAGAAACCTTAACAATCATACCGGTCGAAGTGAGTCATCTCAACTTGCGACATTCACAATTCATCCATCCAAGTCACGTAAAACTACCACTTTCACAACATTAGGGGCAAACATCACTAAGCAAGGAAGTTCGGTATACTCAAGCGACTCAAGAAAATATTCTCCTTCGCTTATTGCTAGTGTTCATCTGCGTACACACCTACGCCCCAGTTCATCTTTTGATAACCAAATGGAAGGGATTTTGGAAAATTCCTCTTTTGCTATACAAGTCATGGAGATAGGGGGAGCTCGGAAAATTACTCCGAGTCCAGTCATACCAATGCAAGAAGATGAGTTTGCTCGGGAAGTTATTTCGAGTACGGTCATATCAAAGCAAGAGGATGAGTCTGCTCGAGAGATGCTTCAAGATGACGATTGCTTCGCCAAGTTCTTCATCAAGCTAGTGGAGAATCAACAAACACCAAACACACATGTCGATTCATCCTCTTCCAAAGCCGAAGAACGGTCACCACGTGACACCGCTCGTTGCCCAAACCTAGCCAAGGTAAAACTTCGCAACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.05

Weight (kDa)

8.58

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 527
AccI GTMKAC 1 cut(s) 141
AciI CCGC 1 cut(s) 525
AcsI RAATTY 1 cut(s) 253
AcvI CACGTG 1 cut(s) 518
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 2 cut(s) 199, 364
AfiI CCNNNNNNNGG 2 cut(s) 507, 547
AflIII ACRYGT 1 cut(s) 475
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 410
AluBI AGCT 2 cut(s) 293, 445
AluI AGCT 2 cut(s) 293, 445
Alw21I GWGCWC 1 cut(s) 295
Ama87I CYCGRG 2 cut(s) 345, 396
ApoI RAATTY 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 504
AvaI CYCGRG 2 cut(s) 345, 396
BanII GRGCYC 1 cut(s) 295
BbrPI CACGTG 1 cut(s) 518
Bbv12I GWGCWC 1 cut(s) 295
BccI CCATC 1 cut(s) 79
BfaI CTAG 3 cut(s) 183, 446, 542
BmeT110I CYCGRG 2 cut(s) 345, 396
BmrI ACTGGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 130, 139
BsaAI YACGTR 2 cut(s) 83, 518
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 507, 547
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 213, 314
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 4 cut(s) 67, 71, 391, 485
BseLI CCNNNNNNNGG 2 cut(s) 507, 547
BseNI ACTGG 2 cut(s) 213, 314
Bsh1285I CGRYCG 1 cut(s) 31
BshTI ACCGGT 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 2 cut(s) 345, 396
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 507, 547
BsoBI CYCGRG 2 cut(s) 345, 396
Bsp1286I GDGCHC 1 cut(s) 295
BspACI CCGC 1 cut(s) 525
BsrBI CCGCTC 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 213, 314
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 546
BssNAI GTATAC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 546
Bst1107I GTATAC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 367, 510
Bst6I CTCTTC 1 cut(s) 496
BstBAI YACGTR 2 cut(s) 83, 518
BstDEI CTNAG 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 510
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 4 cut(s) 67, 71, 391, 485
BstMCI CGRYCG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 479
BstPI GGTNACC 1 cut(s) 510
BstZ17I GTATAC 1 cut(s) 142
BtsCI GGATG 4 cut(s) 67, 71, 391, 485
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 2 cut(s) 198, 363
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 2 cut(s) 277, 476
CviJI RGCY 4 cut(s) 293, 445, 500, 545
CviKI_1 RGCY 4 cut(s) 293, 445, 500, 545
CviQI GTAC 2 cut(s) 198, 363
DdeI CTNAG 1 cut(s) 123
DraIII CACNNNGTG 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Ecl136II GAGCTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 295
Eco53kI GAGCTC 1 cut(s) 293
Eco72I CACGTG 1 cut(s) 518
Eco88I CYCGRG 2 cut(s) 345, 396
Eco91I GGTNACC 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 2 cut(s) 280, 479
FaiI YATR 7 cut(s) 24, 142, 269, 278, 320, 371, 477
FatI CATG 2 cut(s) 276, 475
FblI GTMKAC 1 cut(s) 141
FokI GGATG 4 cut(s) 54, 58, 398, 472
FriOI GRGCYC 1 cut(s) 295
FspBI CTAG 3 cut(s) 183, 446, 542
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 280, 479
HinfI GANTC 6 cut(s) 38, 152, 310, 389, 454, 482
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 504
Hpy166II GTNNAC 2 cut(s) 142, 200
Hpy188I TCNGA 2 cut(s) 297, 309
Hpy188III TCNNGA 4 cut(s) 156, 347, 398, 410
Hpy8I GTNNAC 2 cut(s) 142, 200
HpyAV CCTTC 2 cut(s) 180, 233
HpyCH4III ACNGT 2 cut(s) 367, 510
HpyCH4IV ACGT 2 cut(s) 82, 517
HpyCH4V TGCA 1 cut(s) 328
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 2 cut(s) 82, 517
Hsp92II CATG 2 cut(s) 280, 479
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 3 cut(s) 40, 226, 327
LweI GCATC 1 cut(s) 393
MaeI CTAG 3 cut(s) 183, 446, 542
MaeII ACGT 2 cut(s) 82, 517
MaeIII GTNAC 3 cut(s) 78, 510, 518
MbiI CCGCTC 1 cut(s) 527
MboII GAAGA 4 cut(s) 344, 427, 483, 515
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 3 cut(s) 63, 253, 300
MlyI GAGTC 4 cut(s) 47, 146, 319, 398
MnlI CCTC 3 cut(s) 268, 376, 499
MroXI GAANNNNTTC 1 cut(s) 163
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 1 cut(s) 27
NlaIII CATG 2 cut(s) 280, 479
NmuCI GTSAC 3 cut(s) 78, 510, 518
NspI RCATGY 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 396
PciI ACATGT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 454, 482
PinAI ACCGGT 1 cut(s) 26
PleI GAGTC 4 cut(s) 46, 146, 318, 397
PmaCI CACGTG 1 cut(s) 518
PmlI CACGTG 1 cut(s) 518
PpsI GAGTC 4 cut(s) 46, 146, 318, 397
Ppu21I YACGTR 2 cut(s) 83, 518
PscI ACATGT 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 295
PspCI CACGTG 1 cut(s) 518
PspEI GGTNACC 1 cut(s) 510
RsaI GTAC 2 cut(s) 199, 364
RsaNI GTAC 2 cut(s) 198, 363
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 15
SchI GAGTC 4 cut(s) 47, 146, 319, 398
SduI GDGCHC 1 cut(s) 295
SetI ASST 9 cut(s) 15, 85, 207, 295, 447, 520, 543, 552, 567
SfaNI GCATC 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 3 cut(s) 145, 154, 396
SmoI CTYRAG 3 cut(s) 145, 154, 396
Sse9I AATT 3 cut(s) 63, 253, 300
SsiI CCGC 1 cut(s) 525
SspI AATATT 1 cut(s) 164
SspMI CTAG 3 cut(s) 183, 446, 542
SstI GAGCTC 1 cut(s) 295
StyI CCWWGG 1 cut(s) 546
TaaI ACNGT 2 cut(s) 367, 510
TaiI ACGT 2 cut(s) 85, 520
TaqI TCGA 4 cut(s) 31, 359, 397, 480
TasI AATT 3 cut(s) 63, 253, 300
TfiI GAWTC 2 cut(s) 454, 482
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 3 cut(s) 78, 510, 518
Tsp45I GTSAC 3 cut(s) 78, 510, 518
TspDTI ATGAA 5 cut(s) 56, 179, 207, 427, 474
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 396
XmiI GTMKAC 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 3 cut(s) 183, 446, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.