Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000860

Physical Location & Seq

Genomic Coordinates Forward (+)

4101218 .. 4101649

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCAAAACCTCATAAATTCAAACCCAACATCATCTCCAATCCAGAGGGAACCGACAAGCGCCTCTTAAAATTTCCAAGCACCGAGGCCGATCTACCTTTGCCACCAACCCTGTACTCTCCAAAGACATCCCTTTATTTACTACCACGGCGGTGCGTTTCTCTATTTCAGCGCAACTACGTACAACTCTTTTCCATGAGTTTTGTTCCAATATGTCTTTGGAAACTCCAAGCTATTGTTGTCTCCGTGGACTACCGTCTTGCCCCCGAACACCGCCTCCCGGCAGCCTACGAGGATGCCATAAATGCGTTGCACTGGATCAAAACCACAGAGGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

114

Amino Acids

13.07

Weight (kDa)

8.95

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_3	PF07859	75 - 111	9.5e-14	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62180
fragaria_vesca	FvH4_3g09080 FvH4_7g28650 FvH4_7g28660
malus_domestica	MD00G1003500.v1.1 MD06G1052300.v1.1
prunus_persica	Prupe.2G286500_v2.0.a1 Prupe.2G286600_v2.0.a1 Prupe.2G286700_v2.0.a1
pyrus_communis	pycom06g04390 pycom07g23900
rosa_chinensis	RchiOBHm_Chr1g0376131 RchiOBHm_Chr1g0376141 RchiOBHm_Chr1g0376621 RchiOBHm_Chr1g0376631 RchiOBHm_Chr7g0221361
rosa_laevigata	RLG00000026587 RLG00000026590 RLG00000026591 RLG00000026592 RLG00000026626 RLG00000026628 RLG00000026630
rosa_multiflora	Rmu_co8404235.1_g000001 Rmu_sc0000208.1_g000013 Rmu_sc0000774.1_g000015 Rmu_sc0002892.1_g000039 Rmu_sc0003884.1_g000007 Rmu_sc0005594.1_g000007 Rmu_sc0008991.1_g000003 Rmu_sc0017121.1_g000002 Rmu_ssc0000116.1_g000036 Rmu_ssc0000116.1_g000037 Rmu_ssc0000309.1_g000064
rosa_roxburghii	Rroxscaffold_3G00264170 Rroxscaffold_4G00281930 Rroxscaffold_4G00282380 Rroxscaffold_4G00325300 Rroxscaffold_5G00348740 Rroxscaffold_6G00390170
rosa_rugosa	Rorug01G0394100 Rorug01G0396900
rosa_samantha	Rh1AG405400 Rh1AG405600 Rh1AG413500 Rh1AG413600 Rh1BG369200 Rh1BG373200 Rh1CG382000 Rh1CG387100 Rh1DG398900 Rh1DG404100 Rh1DG404200 Rh2DG217900 Rh4DG244600 Rh5AG326600 Rh5BG520200 Rh5CG544200 Rh6BG136800 Rh6CG392800 Rh6DG121400 Rh6DG238700 Rh7CG442500 Rh7DG414600
rosa_wichuraiana	Rw1G035980 Rw1G036260 Rw1G036300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	151, 274
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	17, 71
AfaI	GTAC	2 cut(s)	116, 183
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	22
AleI	CACNNNNGTG	1 cut(s)	151
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	247
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	17, 71
AspLEI	GCGC	2 cut(s)	63, 174
AsuC2I	CCSGG	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	164
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	247
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	286
BoxI	GACNNNNGTC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	181
BsaJI	CCNNGG	3 cut(s)	84, 146, 246
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 261, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	320
BseDI	CCNNGG	3 cut(s)	84, 146, 246
BseGI	GGATG	2 cut(s)	128, 301
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	296
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	91, 318
BspACI	CCGC	2 cut(s)	151, 274
BspANI	GGCC	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	84, 146, 246
BssMI	GATC	2 cut(s)	91, 318
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	330
BstBAI	YACGTR	1 cut(s)	181
BstDSI	CCRYGG	2 cut(s)	146, 246
BstF5I	GGATG	2 cut(s)	128, 301
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	2 cut(s)	63, 174
BstKTI	GATC	2 cut(s)	94, 321
BstMAI	GTCTC	1 cut(s)	247
BstMBI	GATC	2 cut(s)	91, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstPAI	GACNNNNGTC	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	279
BstSNI	TACGTA	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	296
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	2 cut(s)	146, 246
BtsCI	GGATG	2 cut(s)	128, 301
BtsIMutI	CAGTG	1 cut(s)	313
CfoI	GCGC	2 cut(s)	63, 174
Csp6I	GTAC	2 cut(s)	115, 182
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	3 cut(s)	89, 233, 287
CviKI_1	RGCY	3 cut(s)	89, 233, 287
CviQI	GTAC	2 cut(s)	115, 182
DpnI	GATC	2 cut(s)	93, 320
DpnII	GATC	2 cut(s)	91, 318
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco105I	TACGTA	1 cut(s)	181
FaeI	CATG	1 cut(s)	199
FaiI	YATR	4 cut(s)	15, 197, 214, 302
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	115, 308
Fsp4HI	GCNGC	1 cut(s)	285
GlaI	GCGC	2 cut(s)	62, 173
GluI	GCNGC	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	2 cut(s)	63, 174
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	2 cut(s)	61, 172
HinP1I	GCGC	2 cut(s)	61, 172
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	2 cut(s)	61, 172
Kzo9I	GATC	2 cut(s)	91, 318
LpnPI	CCDG	4 cut(s)	57, 125, 294, 301
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	1 cut(s)	286
MaeII	ACGT	1 cut(s)	180
MalI	GATC	2 cut(s)	93, 320
MboI	GATC	2 cut(s)	91, 318
MluCI	AATT	2 cut(s)	17, 71
MnlI	CCTC	7 cut(s)	21, 40, 74, 79, 286, 287, 325
MseI	TTAA	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	151
MspI	CCGG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	91, 318
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	52
OliI	CACNNNNGTG	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	286
Ppu21I	YACGTR	1 cut(s)	181
PshAI	GACNNNNGTC	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	52
RsaI	GTAC	2 cut(s)	116, 183
RsaNI	GTAC	2 cut(s)	115, 182
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	68
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	91, 318
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	4 cut(s)	13, 100, 183, 235
SfaNI	GCATC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	151
SnaBI	TACGTA	1 cut(s)	181
Sse9I	AATT	2 cut(s)	17, 71
SsiI	CCGC	2 cut(s)	151, 274
StyD4I	CCNGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	183
TasI	AATT	2 cut(s)	17, 71
TatI	WGTACW	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	320
TseI	GCWGC	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	17, 71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.