Rh1AG405400

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000860
Physical Location & Seq
Forward (+)
63317255 .. 63319283
2029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG405400.1

Sequence Viewer

Length: 1020 bp
ATGTCAAAACCTGATCAATTCAAACCCAACATCATCTCCAATCCAGATGGAACCTACACGCGCCTCTTAAAATTTCCAAGCACCGAGGCGGACTCTACCTCAGCCACTAACCATGTACTCTCCAAAGACATCCCTGTAAACCCTGAAACCCAAACCATGGTCCGACTCTTCCTCCCCCGGAATGTCCTTGGCTCCAAAACCAAACTCCCTCTCATATTTTACTACCACGGTGGTGCGTTTCTCTATTTCAGCGCAACTACAACTGTTTTCCATGAGTTTTGTTCCAACATGGCTTTGGAACTCCAAGCTATTGTTGTCTCCGTGGACTACCGTCTTGCCCCTGAACACCGCCTCCCGGCAGCCTACGAGGATGCCATAGATGCGTTGCACTGGATCAAGACCACAGAGGAAGAGTGGGTAAGAGAATTTGCTGATTTCTCAAGCTGTTTTTTAATGGGTACTAGTTCTGGTGGAAACCTAGCTTACCATGCTGGGCTTCTTGCTTGTAAAGTTAGAGATCACCTTGGGCCTTTGGAAATCAAAGGACTGATATTGCACCATCCCTTTTTTGGTGGATCCGAAAGGACCGAGTCGGAACTGAGGATGGAGCATGATCGAATTTTGCCACTACGGGCAACCGATGGAGCGTGGAAATTGGCGTTGCCTATTGGTGCTGACCGTGATCATGAGTATTGCAATCCAACGGTGGGCGATAGAGATGGTATTTGGGCTGCGATTCGGGCCATGGATTGTAGGGTCTTGGTTCTGGGTTGTTATGGAGATCCGATGATTGAGCGACAGATGGGGTTGGCGAAAATGGTAGAGGAGAAGGGTGTACGAACGGTGACTCATTTTGGCAATGGTTGTCATGGTATAACGGCTGCAGTATGGACGCAGAAGCGGCTGTCAAATCACACCAGGGTTGCCGGAGATGAGGGAGGATCTGCTTTCCTCGGGCTCGGGCCTTTCGTTGGCGAGGATGATGGTGTGGCTCTACCCGTTGGAGGAGATTGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

339

Amino Acids

37.34

Weight (kDa)

5.77

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 65 - 168 1e-13 BD-FAE
Abhydrolase_3 PF07859 72 - 291 1.4e-49 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 157
AccII CGCG 1 cut(s) 61
AciI CCGC 3 cut(s) 89, 349, 901
AclWI GGATC 5 cut(s) 401, 570, 583, 776, 949
AcsI RAATTY 3 cut(s) 71, 425, 618
AfaI GTAC 3 cut(s) 117, 460, 837
AfiI CCNNNNNNNGG 6 cut(s) 157, 355, 569, 707, 971, 1004
AgsI TTSAA 1 cut(s) 22
AhlI ACTAGT 1 cut(s) 461
AjnI CCWGG 1 cut(s) 917
AleI CACNNNNGTG 1 cut(s) 231
AloI GAACNNNNNNTCC 2 cut(s) 336, 368
AluBI AGCT 3 cut(s) 308, 444, 482
AluI AGCT 3 cut(s) 308, 444, 482
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 5 cut(s) 401, 570, 583, 776, 949
Ama87I CYCGRG 2 cut(s) 953, 959
AoxI GGCC 3 cut(s) 527, 741, 962
ApeKI GCWGC 3 cut(s) 359, 731, 881
ApoI RAATTY 3 cut(s) 71, 425, 618
AspLEI GCGC 2 cut(s) 63, 254
AspS9I GGNCC 5 cut(s) 160, 527, 585, 741, 962
AsuC2I CCSGG 2 cut(s) 178, 356
AsuHPI GGTGA 2 cut(s) 512, 856
AvaI CYCGRG 2 cut(s) 953, 959
AvaII GGWCC 2 cut(s) 160, 585
BamHI GGATCC 1 cut(s) 575
BanII GRGCYC 1 cut(s) 960
BbvCI CCTCAGC 1 cut(s) 100
BbvI GCAGC 3 cut(s) 371, 718, 868
BccI CCATC 7 cut(s) 41, 567, 598, 635, 713, 796, 977
BceAI ACGGC 1 cut(s) 894
BciT130I CCWGG 1 cut(s) 919
BclI TGATCA 2 cut(s) 13, 682
BcnI CCSGG 2 cut(s) 178, 356
BcoDI GTCTC 1 cut(s) 322
BcuI ACTAGT 1 cut(s) 461
BfaI CTAG 2 cut(s) 462, 479
BfmI CTRYAG 1 cut(s) 882
BisI GCNGC 4 cut(s) 360, 732, 882, 902
BlsI GCNGC 4 cut(s) 361, 733, 883, 903
Bme1390I CCNGG 3 cut(s) 178, 356, 919
Bme18I GGWCC 2 cut(s) 160, 585
BmeT110I CYCGRG 2 cut(s) 953, 959
BmgT120I GGNCC 5 cut(s) 160, 527, 585, 741, 962
BmiI GGNNCC 3 cut(s) 52, 193, 577
BmrFI CCNGG 3 cut(s) 178, 356, 919
BmsI GCATC 2 cut(s) 361, 370
BoxI GACNNNNGTC 1 cut(s) 330
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 100
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 2 cut(s) 178, 356
BsaXI ACNNNNNCTCC 6 cut(s) 20, 50, 156, 186, 336, 366
Bsc4I CCNNNNNNNGG 6 cut(s) 157, 355, 569, 707, 971, 1004
Bse1I ACTGG 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 865
BseBI CCWGG 1 cut(s) 919
BseGI GGATG 5 cut(s) 129, 376, 559, 609, 985
BseLI CCNNNNNNNGG 6 cut(s) 157, 355, 569, 707, 971, 1004
BseMI GCAATG 1 cut(s) 865
BseMII CTCAG 2 cut(s) 114, 590
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 2 cut(s) 839, 1020
BseXI GCAGC 3 cut(s) 371, 718, 868
BseYI CCCAGC 1 cut(s) 491
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 3 cut(s) 529, 743, 964
BsiHKCI CYCGRG 2 cut(s) 953, 959
BsiSI CCGG 3 cut(s) 178, 356, 927
BslI CCNNNNNNNGG 6 cut(s) 157, 355, 569, 707, 971, 1004
BsmAI GTCTC 1 cut(s) 322
BsnI GGCC 3 cut(s) 529, 743, 964
BsoBI CYCGRG 2 cut(s) 953, 959
Bsp1286I GDGCHC 1 cut(s) 960
Bsp143I GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
Bsp19I CCATGG 2 cut(s) 156, 744
BspACI CCGC 3 cut(s) 89, 349, 901
BspANI GGCC 3 cut(s) 529, 743, 964
BspCNI CTCAG 2 cut(s) 113, 591
BspFNI CGCG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 685
BspLI GGNNCC 3 cut(s) 52, 193, 577
BspMAI CTGCAG 1 cut(s) 886
BspPI GGATC 5 cut(s) 401, 570, 583, 776, 949
BsrDI GCAATG 1 cut(s) 865
BsrI ACTGG 1 cut(s) 395
BssMI GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
BssT1I CCWWGG 4 cut(s) 156, 187, 523, 744
Bst2UI CCWGG 1 cut(s) 919
Bst4CI ACNGT 6 cut(s) 230, 265, 332, 680, 706, 844
Bst6I CTCTTC 2 cut(s) 173, 405
BstDEI CTNAG 2 cut(s) 100, 599
BstDSI CCRYGG 4 cut(s) 156, 226, 321, 744
BstF5I GGATG 5 cut(s) 129, 376, 559, 609, 985
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 2 cut(s) 63, 254
BstKTI GATC 8 cut(s) 16, 396, 520, 578, 616, 685, 784, 944
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
BstMWI GCNNNNNNNGC 4 cut(s) 380, 488, 740, 901
BstNI CCWGG 1 cut(s) 919
BstPAI GACNNNNGTC 1 cut(s) 330
BstSCI CCNGG 3 cut(s) 176, 354, 917
BstSFI CTRYAG 1 cut(s) 882
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 371, 718, 868
BstX2I RGATCY 3 cut(s) 575, 781, 941
BstYI RGATCY 3 cut(s) 575, 781, 941
BsuRI GGCC 3 cut(s) 529, 743, 964
BtgI CCRYGG 4 cut(s) 156, 226, 321, 744
BtsCI GGATG 5 cut(s) 129, 376, 559, 609, 985
BtsIMutI CAGTG 1 cut(s) 388
CciI TCATGA 1 cut(s) 685
CfoI GCGC 2 cut(s) 63, 254
Cfr13I GGNCC 5 cut(s) 160, 527, 585, 741, 962
CseI GACGC 1 cut(s) 901
Csp6I GTAC 3 cut(s) 116, 459, 836
CviAII CATG 9 cut(s) 113, 157, 272, 289, 488, 611, 686, 745, 869
CviQI GTAC 3 cut(s) 116, 459, 836
DdeI CTNAG 2 cut(s) 100, 599
DpnI GATC 8 cut(s) 15, 395, 519, 577, 615, 684, 783, 943
DpnII GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
Eam1104I CTCTTC 2 cut(s) 173, 405
EarI CTCTTC 2 cut(s) 173, 405
EciI GGCGGA 1 cut(s) 104
Eco130I CCWWGG 4 cut(s) 156, 187, 523, 744
Eco24I GRGCYC 1 cut(s) 960
Eco47I GGWCC 2 cut(s) 160, 585
Eco88I CYCGRG 2 cut(s) 953, 959
EcoRII CCWGG 1 cut(s) 917
EcoT14I CCWWGG 4 cut(s) 156, 187, 523, 744
EcoT38I GRGCYC 1 cut(s) 960
ErhI CCWWGG 4 cut(s) 156, 187, 523, 744
FaeI CATG 9 cut(s) 116, 160, 275, 292, 491, 614, 689, 748, 872
FatI CATG 9 cut(s) 112, 156, 271, 288, 487, 610, 685, 744, 868
FbaI TGATCA 2 cut(s) 13, 682
Fnu4HI GCNGC 4 cut(s) 360, 732, 882, 902
FokI GGATG 5 cut(s) 116, 383, 546, 616, 992
FriOI GRGCYC 1 cut(s) 960
Fsp4HI GCNGC 4 cut(s) 360, 732, 882, 902
FspBI CTAG 2 cut(s) 462, 479
GlaI GCGC 2 cut(s) 62, 253
GluI GCNGC 4 cut(s) 360, 732, 882, 902
GsaI CCCAGC 1 cut(s) 495
HaeIII GGCC 3 cut(s) 529, 743, 964
HapII CCGG 3 cut(s) 178, 356, 927
HgaI GACGC 1 cut(s) 901
HhaI GCGC 2 cut(s) 63, 254
Hin1II CATG 9 cut(s) 116, 160, 275, 292, 491, 614, 689, 748, 872
Hin6I GCGC 2 cut(s) 61, 252
HinP1I GCGC 2 cut(s) 61, 252
HinfI GANTC 5 cut(s) 92, 165, 590, 736, 847
HpaII CCGG 3 cut(s) 178, 356, 927
HphI GGTGA 2 cut(s) 512, 856
Hpy166II GTNNAC 3 cut(s) 139, 325, 836
Hpy188I TCNGA 4 cut(s) 164, 580, 595, 786
Hpy188III TCNNGA 3 cut(s) 44, 397, 686
Hpy8I GTNNAC 3 cut(s) 139, 325, 836
HpyAV CCTTC 1 cut(s) 823
HpyCH4III ACNGT 6 cut(s) 230, 265, 332, 680, 706, 844
HpyCH4V TGCA 4 cut(s) 388, 556, 696, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 488, 740, 901
HpyF3I CTNAG 2 cut(s) 100, 599
Hsp92II CATG 9 cut(s) 116, 160, 275, 292, 491, 614, 689, 748, 872
HspAI GCGC 2 cut(s) 61, 252
Ksp22I TGATCA 2 cut(s) 13, 682
Kzo9I GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
LmnI GCTCC 3 cut(s) 197, 607, 644
Lsp1109I GCAGC 3 cut(s) 371, 718, 868
LweI GCATC 2 cut(s) 361, 370
MaeI CTAG 2 cut(s) 462, 479
MaeIII GTNAC 1 cut(s) 844
MalI GATC 8 cut(s) 15, 395, 519, 577, 615, 684, 783, 943
MboI GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
MboII GAAGA 2 cut(s) 160, 422
MflI RGATCY 3 cut(s) 575, 781, 941
MhlI GDGCHC 1 cut(s) 960
MluCI AATT 5 cut(s) 17, 71, 425, 618, 653
MlyI GAGTC 4 cut(s) 86, 159, 599, 841
MmeI TCCRAC 5 cut(s) 187, 309, 573, 725, 982
MseI TTAA 2 cut(s) 68, 452
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 3 cut(s) 178, 356, 927
MspR9I CCNGG 3 cut(s) 178, 356, 919
MvaI CCWGG 1 cut(s) 919
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 4 cut(s) 380, 488, 740, 901
NciI CCSGG 2 cut(s) 178, 356
NcoI CCATGG 2 cut(s) 156, 744
NdeII GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
NlaIII CATG 9 cut(s) 116, 160, 275, 292, 491, 614, 689, 748, 872
NlaIV GGNNCC 3 cut(s) 52, 193, 577
NmuCI GTSAC 1 cut(s) 844
OliI CACNNNNGTG 1 cut(s) 231
PagI TCATGA 1 cut(s) 685
PcsI WCGNNNNNNNCGW 1 cut(s) 966
PfeI GAWTC 1 cut(s) 736
PflFI GACNNNGTC 1 cut(s) 589
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 4 cut(s) 361, 733, 883, 903
PleI GAGTC 4 cut(s) 86, 159, 598, 841
PpsI GAGTC 4 cut(s) 86, 159, 598, 841
PshAI GACNNNNGTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 917
PspFI CCCAGC 1 cut(s) 491
PspGI CCWGG 1 cut(s) 917
PspN4I GGNNCC 3 cut(s) 52, 193, 577
PspPI GGNCC 5 cut(s) 160, 527, 585, 741, 962
PstI CTGCAG 1 cut(s) 886
PsuI RGATCY 3 cut(s) 575, 781, 941
PsyI GACNNNGTC 1 cut(s) 589
RsaI GTAC 3 cut(s) 117, 460, 837
RsaNI GTAC 3 cut(s) 116, 459, 836
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 68, 452
SatI GCNGC 4 cut(s) 360, 732, 882, 902
Sau3AI GATC 8 cut(s) 13, 393, 517, 575, 613, 682, 781, 941
Sau96I GGNCC 5 cut(s) 160, 527, 585, 741, 962
SchI GAGTC 4 cut(s) 86, 159, 599, 841
ScrFI CCNGG 3 cut(s) 178, 356, 919
SduI GDGCHC 1 cut(s) 960
SetI ASST 8 cut(s) 13, 56, 101, 310, 446, 480, 484, 525
SfaNI GCATC 2 cut(s) 361, 370
SfcI CTRYAG 1 cut(s) 882
SinI GGWCC 2 cut(s) 160, 585
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
SpeI ACTAGT 1 cut(s) 461
Sse9I AATT 5 cut(s) 17, 71, 425, 618, 653
SsiI CCGC 3 cut(s) 89, 349, 901
SspMI CTAG 2 cut(s) 462, 479
StyD4I CCNGG 3 cut(s) 176, 354, 917
StyI CCWWGG 4 cut(s) 156, 187, 523, 744
TaaI ACNGT 6 cut(s) 230, 265, 332, 680, 706, 844
TaqI TCGA 1 cut(s) 616
TaqII GACCGA 1 cut(s) 602
TasI AATT 5 cut(s) 17, 71, 425, 618, 653
TatI WGTACW 1 cut(s) 115
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 1 cut(s) 736
Tru1I TTAA 2 cut(s) 68, 452
Tru9I TTAA 2 cut(s) 68, 452
TscAI CASTG 1 cut(s) 395
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 3 cut(s) 359, 731, 881
Tsp45I GTSAC 1 cut(s) 844
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 1 cut(s) 395
Tth111I GACNNNGTC 1 cut(s) 589
Van91I CCANNNNNTGG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 160, 585
XapI RAATTY 3 cut(s) 71, 425, 618
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 566
XspI CTAG 2 cut(s) 462, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.