Rh6CG392800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000860
Physical Location & Seq
Forward (+)
57898113 .. 57906442
8330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG392800.1

Sequence Viewer

Length: 426 bp
ATGACAAGAACACTCCGCGCACTCATTCTCTGCTACTGGTGCCGAAGTGGAGCCGTCGCCGGCAAGAATTTCACGAAGAAAGCACAATCCAAGATAGATGGTGAGTTTATTTGGGCTGCTGCTGTTCGCATTCAATTTGGATATCTTGTATCACATGTCTTCGTCCTTTCCAAGCTTTGTTGCCAAGGTGGTAACTTGGTATCTACTAGAGGTGTTAATGGTGGAAAAGAAGCCTCAGGATCCTGCTCCTATCCAGTAGCCGCTAGCCAAGGTAATAGAATAGATCTGAGTTTAAAAGATCCGAGCTTTGTTGCCAAGGACAGCGAGTTGGTCCGGTCGAATTGTGAAGCAAGGCTAAAAGGAGGGAGTCAGGGACTATGTAACATAATTCAGGGACTCCATTACAGGGAGTCAGGGACTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.18

Weight (kDa)

9.44

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 39
AccII CGCG 1 cut(s) 18
AciI CCGC 2 cut(s) 16, 261
AclWI GGATC 3 cut(s) 234, 247, 293
AcsI RAATTY 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 406
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 1 cut(s) 134
AluBI AGCT 2 cut(s) 175, 306
AluI AGCT 2 cut(s) 175, 306
AlwI GGATC 3 cut(s) 234, 247, 293
ApeKI GCWGC 2 cut(s) 116, 119
ApoI RAATTY 1 cut(s) 67
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 113
AsuNHI GCTAGC 1 cut(s) 263
AvaII GGWCC 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 235
BamHI GGATCC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 103, 106
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 38
BfaI CTAG 2 cut(s) 207, 264
BglII AGATCT 1 cut(s) 283
BisI GCNGC 3 cut(s) 117, 120, 261
BlsI GCNGC 3 cut(s) 118, 121, 262
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BmiI GGNNCC 3 cut(s) 41, 52, 241
BmtI GCTAGC 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 151
BsaJI CCNNGG 3 cut(s) 184, 268, 315
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 41, 254
Bse21I CCTNAGG 1 cut(s) 235
BseDI CCNNGG 3 cut(s) 184, 268, 315
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 249, 278
BseNI ACTGG 2 cut(s) 41, 254
BseXI GCAGC 2 cut(s) 103, 106
Bsh1236I CGCG 1 cut(s) 18
Bsh1285I CGRYCG 1 cut(s) 338
BshNI GGYRCC 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 338
BsiSI CCGG 2 cut(s) 60, 334
BslFI GGGAC 2 cut(s) 387, 408
BslI CCNNNNNNNGG 1 cut(s) 406
BsmFI GGGAC 2 cut(s) 387, 408
BsmI GAATGC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 239, 283, 298
BspACI CCGC 2 cut(s) 16, 261
BspCNI CTCAG 2 cut(s) 248, 279
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 3 cut(s) 41, 52, 241
BspOI GCTAGC 1 cut(s) 267
BspPI GGATC 3 cut(s) 234, 247, 293
BspT107I GGYRCC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 2 cut(s) 41, 254
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 3 cut(s) 184, 268, 315
BssMI GATC 3 cut(s) 239, 283, 298
BssT1I CCWWGG 3 cut(s) 184, 268, 315
BstC8I GCNNGC 2 cut(s) 61, 265
BstDEI CTNAG 2 cut(s) 235, 287
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 3 cut(s) 242, 286, 301
BstMBI GATC 3 cut(s) 239, 283, 298
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNSI RCATGY 1 cut(s) 158
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 103, 106
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 3 cut(s) 239, 283, 298
BstYI RGATCY 3 cut(s) 239, 283, 298
Bsu36I CCTNAGG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 61, 265
CfoI GCGC 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 331
CviAII CATG 1 cut(s) 155
CviJI RGCY 8 cut(s) 53, 116, 175, 233, 260, 267, 306, 355
CviKI_1 RGCY 8 cut(s) 53, 116, 175, 233, 260, 267, 306, 355
DdeI CTNAG 2 cut(s) 235, 287
DpnI GATC 3 cut(s) 241, 285, 300
DpnII GATC 3 cut(s) 239, 283, 298
DraI TTTAAA 1 cut(s) 294
Eco130I CCWWGG 3 cut(s) 184, 268, 315
Eco32I GATATC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 331
Eco81I CCTNAGG 1 cut(s) 235
EcoRV GATATC 1 cut(s) 143
EcoT14I CCWWGG 3 cut(s) 184, 268, 315
ErhI CCWWGG 3 cut(s) 184, 268, 315
FaeI CATG 1 cut(s) 158
FaiI YATR 4 cut(s) 156, 379, 386, 422
FaqI GGGAC 2 cut(s) 387, 408
FatI CATG 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 117, 120, 261
Fsp4HI GCNGC 3 cut(s) 117, 120, 261
FspBI CTAG 2 cut(s) 207, 264
GlaI GCGC 1 cut(s) 19
GluI GCNGC 3 cut(s) 117, 120, 261
HapII CCGG 2 cut(s) 60, 334
HhaI GCGC 1 cut(s) 20
Hin1II CATG 1 cut(s) 158
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 367, 396, 410
HpaII CCGG 2 cut(s) 60, 334
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 288, 303
Hpy188III TCNNGA 2 cut(s) 73, 237
Hpy99I CGWCG 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 2 cut(s) 235, 287
Hsp92II CATG 1 cut(s) 158
HspAI GCGC 1 cut(s) 18
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 3 cut(s) 239, 283, 298
LmnI GCTCC 2 cut(s) 50, 251
Lsp1109I GCAGC 2 cut(s) 103, 106
MaeI CTAG 2 cut(s) 207, 264
MaeIII GTNAC 2 cut(s) 191, 380
MalI GATC 3 cut(s) 241, 285, 300
MboI GATC 3 cut(s) 239, 283, 298
MboII GAAGA 2 cut(s) 88, 151
MflI RGATCY 3 cut(s) 239, 283, 298
MluCI AATT 4 cut(s) 67, 134, 340, 387
MlyI GAGTC 3 cut(s) 376, 390, 419
MnlI CCTC 3 cut(s) 203, 244, 356
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 2 cut(s) 216, 293
MspI CCGG 2 cut(s) 60, 334
Mva1269I GAATGC 1 cut(s) 129
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 39
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 3 cut(s) 239, 283, 298
NgoMIV GCCGGC 1 cut(s) 59
NheI GCTAGC 1 cut(s) 263
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 3 cut(s) 41, 52, 241
NspI RCATGY 1 cut(s) 158
PciI ACATGT 1 cut(s) 154
PctI GAATGC 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 118, 121, 262
PleI GAGTC 3 cut(s) 375, 390, 418
PpsI GAGTC 3 cut(s) 375, 390, 418
PscI ACATGT 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 41, 52, 241
PspPI GGNCC 1 cut(s) 331
PsuI RGATCY 3 cut(s) 239, 283, 298
SaqAI TTAA 2 cut(s) 216, 293
SatI GCNGC 3 cut(s) 117, 120, 261
Sau3AI GATC 3 cut(s) 239, 283, 298
Sau96I GGNCC 1 cut(s) 331
SchI GAGTC 3 cut(s) 376, 390, 419
SetI ASST 5 cut(s) 177, 190, 214, 274, 308
SinI GGWCC 1 cut(s) 331
Sse9I AATT 4 cut(s) 67, 134, 340, 387
SsiI CCGC 2 cut(s) 16, 261
SspMI CTAG 2 cut(s) 207, 264
StyI CCWWGG 3 cut(s) 184, 268, 315
TaqI TCGA 1 cut(s) 338
TasI AATT 4 cut(s) 67, 134, 340, 387
TauI GCSGC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 216, 293
Tru9I TTAA 2 cut(s) 216, 293
TseI GCWGC 2 cut(s) 116, 119
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 1 cut(s) 67
XceI RCATGY 1 cut(s) 158
XspI CTAG 2 cut(s) 207, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.